View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_high_1 (Length: 436)
Name: NF10449_high_1
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 2051219 - 2051629
Alignment:
| Q |
18 |
atagtatcccacctgatatcttcaacagcagctgaccaataaccattgttgttatgatcatctcctttcatctttccttcatgaaaatgataaaccatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2051219 |
atagtatcccacctgatatcttcaacagcagctgaccaataaccattgttgttatgatcatctcctttcatctttccttcatgaaaatgataaaccatag |
2051318 |
T |
|
| Q |
118 |
gagtactacaaaaactatcaagagcaagagcaggcatcattgaaggactagggcttccatttgtaagcaacagtctctcttgtttatccaccttcaactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2051319 |
gagtactacaaaaactatcaagagcaagagcaggcatcattgaaggactagggcttccatttgtaagcaacagtctctcttgtttatccaccttcaactt |
2051418 |
T |
|
| Q |
218 |
cttattcctcttcaccacagaactcttccatgatgatcttgttccataataactactactactagcccttgatgttggaactacaacaagtgctgaattt |
317 |
Q |
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| T |
2051419 |
cttattcctcttcaccacagaattcttccatgatgatcttgttccataataactactactactagcccttgatgttggaactacaacaagtgctgaattt |
2051518 |
T |
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| Q |
318 |
gattcttcgcatgtaaccaactttctcattatgtagttacctaagcacttttttgtctttttgattgctcccatgatctttgccattggtcttggtggtt |
417 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2051519 |
gattcttcacatgtaaccaactttctcattatgtagttacctaagcacttttttgtctttttgattgctcccatgatctttgccattggtcttggtggtt |
2051618 |
T |
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| Q |
418 |
gtccctttgct |
428 |
Q |
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||| ||||||| |
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| T |
2051619 |
gtctctttgct |
2051629 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 44908358 - 44908316
Alignment:
| Q |
21 |
gtatcccacctgatatcttcaacagcagctgaccaataaccat |
63 |
Q |
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||||||||| |||| |||||||||||||| ||||||||||||| |
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| T |
44908358 |
gtatcccacttgatctcttcaacagcagcagaccaataaccat |
44908316 |
T |
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