View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_high_10 (Length: 229)
Name: NF10449_high_10
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_high_10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 87 - 229
Target Start/End: Complemental strand, 43009409 - 43009267
Alignment:
| Q |
87 |
ttttttcttatgaaagaatctaatggcaaaacttacacatatttagtgtaaaaaagaggggtattatatgtatgtacgaactcgctctcggtatatcaaa |
186 |
Q |
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| T |
43009409 |
tttttttttatgaaagaatctaatggcaaaacttacacatatttaatgtaaaaaagaggggtattacatgcatgtacgaactcgctctcagtatatcaaa |
43009310 |
T |
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| Q |
187 |
catcttgcaattataaattgagttgtgttatcgagactatata |
229 |
Q |
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| T |
43009309 |
cctctcgcaattataaattgagttgtgttatcgagattatata |
43009267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 43009604 - 43009549
Alignment:
| Q |
6 |
ataaagaccctctaaaaacaaatatatgttgttttgtttaagcaaactagtttact |
61 |
Q |
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| T |
43009604 |
ataaagaccctctaaaaacaaatatatgttgttttgtttaagcaaactagtttact |
43009549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 43009503 - 43009468
Alignment:
| Q |
56 |
tttactggatacaaattctatgtacaattcattttt |
91 |
Q |
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| T |
43009503 |
tttactggatacaaattctatgtacaaatcattttt |
43009468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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