View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_high_6 (Length: 251)
Name: NF10449_high_6
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 34926532 - 34926307
Alignment:
| Q |
18 |
atacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926532 |
atacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatc |
34926433 |
T |
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| Q |
118 |
caaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacacccctccaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926432 |
caaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacacccctccaat |
34926333 |
T |
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| Q |
218 |
tcccatgaatatgactgcttcttctc |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34926332 |
tcccatgaatatgactgcttcttctc |
34926307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 34931439 - 34931213
Alignment:
| Q |
18 |
atacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatc |
117 |
Q |
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|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| | |
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| T |
34931439 |
atacttgctattggaggttatcctggactgagtgttccagcaggatatgaaaagggtcagccatttggaattttctttggaggtttgaaagggtcagagc |
34931340 |
T |
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| Q |
118 |
caaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacaccc-ctccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| |||||| |
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| T |
34931339 |
caaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccctttcggaagttataagtttgattgaacgccctctccaa |
34931240 |
T |
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| Q |
217 |
ttcccatgaatatgactgcttcttctc |
243 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
34931239 |
ttcccatgaatataactgcttcttctc |
34931213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 34914096 - 34913917
Alignment:
| Q |
18 |
atacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatc |
117 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
34914096 |
atacttgctattggaggttatcttggagtgattgttccagcaggatatgaaaaaggtcagccatttggaatttgctttggaggtttgaaagggtcagagc |
34913997 |
T |
|
| Q |
118 |
caaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcggaagttagaagtt |
197 |
Q |
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| T |
34913996 |
caaagttgattgagattgcttattcatttgagcaagcaactttgatcagaaagccaccaccccttaggaagttggaagtt |
34913917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 34919789 - 34919623
Alignment:
| Q |
18 |
atacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatc |
117 |
Q |
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|||||||| |||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| | |
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| T |
34919789 |
atacttgctattggaggttatcctggaatcattgttccagcaggatatgaaaagggtaagccatttggaatttgttttggaggtttgaaaggctcagagc |
34919690 |
T |
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| Q |
118 |
caaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcg |
184 |
Q |
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| T |
34919689 |
cgaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctcctcttcg |
34919623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 34909834 - 34909662
Alignment:
| Q |
18 |
atacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatc |
117 |
Q |
| |
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||||| || |||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| ||||| | |
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| T |
34909834 |
atactggctattggaggttatcctggagtgagtgttccagcaggatatgaaaagggtgtaccatttggaatttgttttggtggtttgaaagggtcagagc |
34909735 |
T |
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| Q |
118 |
caaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctccccttcggaagtt |
190 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34909734 |
caaagttgattgaaattgcttattcattcgagcaagcaactttgatcagaaagccacctccccttaggaagtt |
34909662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 34896344 - 34896180
Alignment:
| Q |
18 |
atacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatc |
117 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||| ||||| | |
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| T |
34896344 |
atacttgctattggaggttatcctggagtgagtgttccagcaggatatgaaaagggtgtgccatttggaatttgctttggtggtttaaaagggtcagagc |
34896245 |
T |
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| Q |
118 |
caaagttgattgaaattgcttattcatttgagcaagcaactttgatcagaaagccacctcccctt |
182 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |||||| |
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| T |
34896244 |
caaagttgattgaaattgcttattccttcgagcaagcaactttgatcagaaagtcaccacccctt |
34896180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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