View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_low_10 (Length: 246)
Name: NF10449_low_10
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 40280988 - 40280866
Alignment:
| Q |
24 |
acctttgccctataataagtcttactgattcagaaaagaaacaaaaccaacagtcttagagatgattaacaaccatggtgatgcgtttgatgatgcatca |
123 |
Q |
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| T |
40280988 |
acctttgcccta--ataagtcttactgattcagaaaagaaacaaaaccaacagtcttagagatgattaacaaccatggtgatgcgtttgatgatgcatca |
40280891 |
T |
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| Q |
124 |
tggcttacacgctcactctcacagc |
148 |
Q |
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| T |
40280890 |
tggcttacacgctcactctcacagc |
40280866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 40280846 - 40280786
Alignment:
| Q |
174 |
gccacctaggcctccaccatctgaatacacacgattaacatctaccacgcacctctctgct |
234 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40280846 |
gccacctaggcctccaccatctgaatacacaccattaacatctaccacgcacctctctgct |
40280786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 40280654 - 40280614
Alignment:
| Q |
194 |
ctgaatacacacgattaacatctaccacgcacctctctgct |
234 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
40280654 |
ctgaatacacaccattaacatctaccacgcacctctctgct |
40280614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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