View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10449_low_12 (Length: 241)
Name: NF10449_low_12
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_low_12 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 30408600 - 30408824
Alignment:
| Q |
17 |
cagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaattcatgaccaaaggaaatttggata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30408600 |
cagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaatttgtgaccaaaggaaatttggata |
30408699 |
T |
|
| Q |
117 |
atcatttgtttagaagtatgttgttaattaacctccttttataattgtcttttttatataatgagtttttatttgttgacttcatttacaagttagtatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408700 |
atcatttgtttagaagtatgttgttaattaacctccttttataattgtcttttttatataatgagtttttatttgttgacttcatttacaagttagtatc |
30408799 |
T |
|
| Q |
217 |
ttacaccactgaaaatctcatatct |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30408800 |
ttacaccactgaaaatctcatatct |
30408824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 30421808 - 30421934
Alignment:
| Q |
17 |
cagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaattcatgaccaaaggaaatttggata |
116 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| |||||||||||||||| | ||| |||||||| ||||||||||| ||||||| |||| |||||||| |
|
|
| T |
30421808 |
cagctgcatcatccaaatctagtgaaactgataggttactgcttagaggatgactaccggattttggtatatgaatttgtgaccaagggaagtttggata |
30421907 |
T |
|
| Q |
117 |
atcatttgtttagaagtatgttgttaa |
143 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
30421908 |
atcatttgtttagaagtatgttattaa |
30421934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 30411499 - 30411626
Alignment:
| Q |
17 |
cagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaattcatgaccaaaggaaatttggata |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||| || ||||| || || ||||| || || | |||| |||||||| |
|
|
| T |
30411499 |
cagctgcatcatcctaatctcgtgaaactgattggttactgattagaggatagctaccgaatttttgtgtacgaatttttggccgagggaagtttggata |
30411598 |
T |
|
| Q |
117 |
atcatttgtttagaagtatgttgttaat |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30411599 |
atcatttgtttagaagtatgttgttaat |
30411626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 30404737 - 30404890
Alignment:
| Q |
17 |
cagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaattcatgaccaaaggaaatttggata |
116 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||||||| ||| |||||| | | ||||||| ||||||||||| | ||||| |||| ||| |||| |
|
|
| T |
30404737 |
cagctgcatcatcctaatcttgtgaaattgattggttattgcatagaggatgaatgctggattttggtatatgaatttcttaccaagggaagtttagata |
30404836 |
T |
|
| Q |
117 |
atcatttgtttagaagtatgttgttaattaacctccttttataattgtctttttt |
171 |
Q |
| |
|
||| |||||||| ||||||| | |||||| ||||||| ||| ||||||| |||| |
|
|
| T |
30404837 |
atcttttgtttaaaagtatg-tattaattttcctccttctattattgtctctttt |
30404890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 30401416 - 30401463
Alignment:
| Q |
18 |
agctgcgtcatcctaatctcgtgaaactgattggttactgcttagagg |
65 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
30401416 |
agctgtgtcatcctaatcttgtgagactgattggttactgcttagagg |
30401463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 30388902 - 30388948
Alignment:
| Q |
17 |
cagctgcgtcatcctaatctcgtgaaactgattggttactgcttaga |
63 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
30388902 |
cagctgagtcatcctaatcttgtgagactgattggttactgcttaga |
30388948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 31445298 - 31445346
Alignment:
| Q |
17 |
cagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagg |
65 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
31445298 |
cagctgcgtcatcctaatcttgtcaaactgattggttactgcttagagg |
31445346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 34150105 - 34150148
Alignment:
| Q |
17 |
cagctgcgtcatcctaatctcgtgaaactgattggttactgctt |
60 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
34150105 |
cagctgcatcatcctaatcttgtgaaactgatcggttactgctt |
34150148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University