View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_low_18 (Length: 216)
Name: NF10449_low_18
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 34525264 - 34525452
Alignment:
| Q |
24 |
atatttttctgttggtattgcaacggaaaaagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttc |
123 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525264 |
atatttttctgttggtattgcaacagaaaaagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttc |
34525363 |
T |
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| Q |
124 |
ctcgcaaatgcgtctat--------ctattctaagaacaaagttgacataagcaattcctgagaaaaaatagctctgtttcttctctct |
204 |
Q |
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| T |
34525364 |
ctcgcaaatgcgtctatctattctactattctaagaacaaagttgacataagcaattcctgagaaaaagtagctctctttcttctctct |
34525452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 27631931 - 27632118
Alignment:
| Q |
24 |
atatttttctgttggtattgcaacggaaaaagaaaaacacaatgcctcattttacaagcatc---------atcaaaagtatctgaagatataattaata |
114 |
Q |
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| T |
27631931 |
atatttttctgttggtattgcaacagaaa--gaaaaacacaatgcctctttttacaagcatcgtcaaaactatcaaaactatctgaagatataattaata |
27632028 |
T |
|
| Q |
115 |
aagcagttcctcgcaaatgcgtctatctattctaagaacaaagttgacataagcaattcctgagaaaaaatagctctgtttcttctctct |
204 |
Q |
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| T |
27632029 |
aagcagttcctcgcaaatgcgcctatctattctaaggacaaagttgacataagcaattcctgagaaaaatcagccctgttacttctctct |
27632118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 34515965 - 34516160
Alignment:
| Q |
24 |
atatttttctgttggtattgcaacggaaaaagaaaaacacaatgcctcattttacaagcatc---------atcaaaagtatctgaagatataattaata |
114 |
Q |
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| T |
34515965 |
atatttttctgttggtattgcaacagaaa--gaaaaacgcaatgcctctttttacaagcatcgtcaaaactatcaaaactatctgaagatataattaata |
34516062 |
T |
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| Q |
115 |
aagcagttcctcgcaaatgcgtctatctattcta--------agaacaaagttgacataagcaattcctgagaaaaaatagctctgtttcttctctct |
204 |
Q |
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| T |
34516063 |
aagcagttcctcgcaaatgcgcctatctattctactattctaaggacaaagttgacataagcaattcctgagaaaaagtagctctgtttcttctctct |
34516160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 34524742 - 34524848
Alignment:
| Q |
24 |
atatttttctgttggtattgcaacggaaaaagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataaagcagttc |
123 |
Q |
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|||||||||||||||||||||||| |||||| ||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
34524742 |
atatttttctgttggtattgcaacagaaaaa----aacgcaatgcctctttttacatgcatcatcaaagttatctgaagatataattaataacgcagttc |
34524837 |
T |
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| Q |
124 |
ctcgcaaatgc |
134 |
Q |
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||||||||||| |
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| T |
34524838 |
ctcgcaaatgc |
34524848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 27615945 - 27616058
Alignment:
| Q |
24 |
atatttttctgttggtattgcaacggaaa--------aagaaaaacacaatgcctcattttacaagcatcatcaaaagtatctgaagatataattaataa |
115 |
Q |
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|||||||||||||||||||||||| |||| || |||||| ||||||||| ||||||||||||| ||| || ||||| |||||||||||||||| |
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| T |
27615945 |
atatttttctgttggtattgcaacagaaagaaaagaaaaaaaaaacgcaatgcctctttttacaagcatcgtcacaactatctaaagatataattaataa |
27616044 |
T |
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| Q |
116 |
agcagttcctcgca |
129 |
Q |
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||||||| |||||| |
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| T |
27616045 |
agcagtttctcgca |
27616058 |
T |
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