View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_low_2 (Length: 391)
Name: NF10449_low_2
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 28148460 - 28148820
Alignment:
| Q |
18 |
ttgaggactgaaaatgataagcttcttggacaaatcaatgatttgggtaatgaattgacttcagttaggtatggaatattctactcataccccctttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28148460 |
ttgaggactgaaaatgataagcttcttggacaaatcaatgatttgggtaatgaattgacttcagttaggtatggaatattctactcataccccctttctt |
28148559 |
T |
|
| Q |
118 |
tattttgtagatttatatggatattaattgaaaaaagggtttttgaaaaatttatacgaacaatagcgatttggtgtattatgattcaattttggcccgg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
28148560 |
tattttgtagatttttatggatattaattgaaaaaagggtttttgaaaaatttataccaacaatagcgatttggtgtattatgattcaattttggcctgg |
28148659 |
T |
|
| Q |
218 |
tggtgtatgaattgggacttacgagtgcgctcctctctaagatcgtaagttcaatgtgctaacaattcttgggttggataagtccatacatggctttact |
317 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
28148660 |
tggtgtataaattgggacttgcgagtgcgctcctctctaagatcgtaagttcaatgtgctaacagttcttgggttggataagtccatacagggctttact |
28148759 |
T |
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| Q |
318 |
ccaacttcaattggtcccctgctagtagatggtgggattggtcccccaaattaggtggtct |
378 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28148760 |
ccgacttcaattggtcccctgctagtagatggtgggattggtcccccaaattaggtggtct |
28148820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 22016335 - 22016611
Alignment:
| Q |
18 |
ttgaggactgaaaatgataagcttcttggacaaatcaatgatttgggtaatgaattgacttcagttaggtatggaatattctactcataccccctttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22016335 |
ttgaggactgaaaatgataagcttcttggacaaatcaatgatttgggtaatgaattgacttcagttaggtatggaatattctactcataccctctttctt |
22016434 |
T |
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| Q |
118 |
tattttgtagatttatatggatattaattgaaaaaagggtttttgaaaaatttatacgaacaatagcgatttggtgtattatgattcaattttggcccgg |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22016435 |
tattttgtagatttttatggatattaattgaaaaaagggtttttgaaaaatttatacgaacaatagcgatttggtgtattatgattcaattttggcccgg |
22016534 |
T |
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| Q |
218 |
tggtgtatgaattgggacttacgagtgcgctcctctctaagatcgtaagttcaatgtgctaacaattcttgggttgg |
294 |
Q |
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| T |
22016535 |
tggtgtatgaattgggacttatgagtgcgctcctctctaagatcgtaagttcaatgtgctaacaattcttggattgg |
22016611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 364
Target Start/End: Original strand, 43504727 - 43504770
Alignment:
| Q |
321 |
acttcaattggtcccctgctagtagatggtgggattggtccccc |
364 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
43504727 |
acttcaattggccccctgctagtggatggtgggattggtccccc |
43504770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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