View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_low_20 (Length: 201)
Name: NF10449_low_20
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 30585464 - 30585434
Alignment:
| Q |
154 |
gttctccaagaagatcagcagcagcttgaac |
184 |
Q |
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| T |
30585464 |
gttctccaagaagatcagcagcagcttgaac |
30585434 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 30585596 - 30585566
Alignment:
| Q |
12 |
agcaaaggattaacaaaatagtaatacagaa |
42 |
Q |
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| T |
30585596 |
agcaaaggattaacaaaatagtaatacagaa |
30585566 |
T |
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