View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10449_low_3 (Length: 368)
Name: NF10449_low_3
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 41060236 - 41059893
Alignment:
| Q |
18 |
cactgatcatgtcacattttctcttacaaatttcacaacttatcaaactataaaaccgtttactacgagattaccaaatggttttcacaccacttttaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41060236 |
cactgatcatgtcacattttctcttacaaatttcacagcttatcaaactataaaaccatttactacgagattaccaaatggttttcacaccactattacc |
41060137 |
T |
|
| Q |
118 |
atttctggttcagttaatttatctcctaacattgtacaatgtttactactttccttattttactgttaactttatatttgtaactaaagtgattcaattc |
217 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||| | |
|
|
| T |
41060136 |
atttctggttcagttaatttatctacaaacattatacaatgtttactacattcctgattttactgttaactttatatttgtcactaaagcgattcaatcc |
41060037 |
T |
|
| Q |
218 |
atccactgtttcttttccttttatactaatcaatgtttgattttgattttgcataattcaaccaagaaactgattggtaccgaggaaagacatggaagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
41060036 |
atccactgtttcttttccttttatactaatcaatgtttgattttgattttacataattcaaccaagaaactgattggtacggaggagagacatggatgtt |
41059937 |
T |
|
| Q |
318 |
tataagctctcaaagcttctaccaaggattcatcacctatgctt |
361 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41059936 |
tgtatgctctcaaagcttctaccaaggattcatcacctaagctt |
41059893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University