View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10449_low_4 (Length: 365)

Name: NF10449_low_4
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10449_low_4
NF10449_low_4
[»] chr1 (16 HSPs)
chr1 (22-350)||(10901559-10901887)
chr1 (25-193)||(11004991-11005159)
chr1 (25-193)||(11010863-11011031)
chr1 (25-193)||(11033154-11033322)
chr1 (25-193)||(10914562-10914730)
chr1 (25-189)||(10979297-10979461)
chr1 (31-193)||(11007707-11007869)
chr1 (25-193)||(11028576-11028744)
chr1 (33-193)||(10974227-10974387)
chr1 (25-193)||(10903402-10903567)
chr1 (261-320)||(10908695-10908756)
chr1 (54-175)||(9432824-9432945)
chr1 (80-178)||(9453808-9453906)
chr1 (58-181)||(9318271-9318394)
chr1 (58-181)||(9319908-9320031)
chr1 (125-181)||(9350292-9350348)
[»] chr6 (1 HSPs)
chr6 (125-181)||(15927177-15927233)
[»] chr3 (1 HSPs)
chr3 (58-181)||(9159598-9159721)
[»] chr4 (1 HSPs)
chr4 (55-181)||(27692423-27692549)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 10901559 - 10901887
Alignment:
Q  22 tcaattgttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgcc 121  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10901559 tcaatttttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgtgagatattgtgcc 10901658  T
Q  122 gacatttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgctcatatgtttagtaataaaattaaatctn 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10901659 gacatttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgctcatatgtttagtaataaaattaaatcta 10901758  T
Q  222 nnnnnnngtatgtgtgcgacagtgctttcaccttagaccgtgcttgaaaataaataaaagtgctatcaccgacaatggtgcctttaaaatcaatcttccc 321  Q
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10901759 aaaaaaagtatgtgtgcgacagtgctttcaccgtagaccgtgcttgaaaataaataaaagtgctatcaccgacaatggtgcctttaaaatcaatcttccc 10901858  T
Q  322 tttgctattatacaccttcattgcacatg 350  Q
    |||||||||||||||||||||||||||||    
T  10901859 tttgctattatacaccttcattgcacatg 10901887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 11005159 - 11004991
Alignment:
Q  25 attgttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgac 124  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  11005159 attgctcagccaatggattcaagttcttccttctacttgccatctccatcaacaacatcccaaagctatagacatcagctttgtgagatattgtgccgac 11005060  T
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 193  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  11005059 atttctgtagaatagttcaggggccatgtatccaatggttcctcttgctgcagttaaggacacaatgct 11004991  T

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Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 11010863 - 11011031
Alignment:
Q  25 attgttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgac 124  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  |||||||||||| ||    
T  11010863 attgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaac 11010962  T
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 193  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  11010963 atttctgtagaatagttcaggggccatatatccaatggttcctcttgctgcagttaatgacacaatgct 11011031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 11033154 - 11033322
Alignment:
Q  25 attgttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgac 124  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||  |||||||||||||||    
T  11033154 attgatcagccaatgcattcaagttcttccttctatttgccatctccatcaacaacatcccaaaactataaacatcagctttgtaagatattgtgccgac 11033253  T
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 193  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||||  ||||||||    
T  11033254 atttcggtagaatagttcaggggccatatatccaatggttcctcttgctgcagttaatgtgacaatgct 11033322  T

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Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 10914562 - 10914730
Alignment:
Q  25 attgttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgac 124  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||||||||| ||||||||||||||||    
T  10914562 attgatcagccaatgcattcaaattcttccttctgcttgccatctccattaacaacatcccaaagctatatacatcagctttgtgagatattgtgccgac 10914661  T
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 193  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||    
T  10914662 atttctatagaataattcaggggccatatatccgatggttcctcttgctgcagttaatgacacaatgct 10914730  T

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Target: chr1; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 10979297 - 10979461
Alignment:
Q  25 attgttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgac 124  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  |||||||||||| ||    
T  10979297 attgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaac 10979396  T
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaa 189  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||| ||||    
T  10979397 atttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaa 10979461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 11007707 - 11007869
Alignment:
Q  31 cagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgacatttct 130  Q
    |||||||| ||| |||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||  |||||| |||||||||||||     
T  11007707 cagccaatacatccaagttcttccttctatttgccatctccattaacaacatcccaaaactataaacatcagctttgtaagatatcgtgccgacatttcg 11007806  T
Q  131 gtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 193  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  11007807 gtagaatagttcaggggccatgtatccaatggttcctcttgctgcagttaatgacacaatgct 11007869  T

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Target: chr1; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 11028744 - 11028576
Alignment:
Q  25 attgttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgac 124  Q
    |||||||||||||||||||| | |||||||||||| | || |||||||| |||||||| ||||| ||||||||||||||||||  |||||||||||| ||    
T  11028744 attgttcagccaatgcattctaattcttccttctattcgcaatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaac 11028645  T
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 193  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  11028644 atttctatagaatagttcaggggccatgtatccaatggttcttcttgctgcagttaatgacacaatgct 11028576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 10974227 - 10974387
Alignment:
Q  33 gccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgacatttctgt 132  Q
    |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||  |||||||||||| | ||||||||    
T  10974227 gccaatgcattcaaattcttccttctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgt 10974326  T
Q  133 agaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 193  Q
    |||| | ||||||||||||||||||||| ||||||||||| || |||||||  ||||||||    
T  10974327 agaacagttcaggggccatgtatccaatcgttcctcttgcagcagttaatggcacaatgct 10974387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 10903402 - 10903567
Alignment:
Q  25 attgttcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgac 124  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||  ||||||  | || ||    
T  10903402 attgttcggccaatgcattcaagttcttccttctacttgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatatcattccaac 10903501  T
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 193  Q
    |||||||||||| | |||||||||    ||||||||||||||||||||||| |||||||| ||||||||    
T  10903502 atttctgtagaaaagttcaggggc---atatccaatggttcctcttgctgcagttaatgacacaatgct 10903567  T

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Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 10908695 - 10908756
Alignment:
Q  261 gtgcttgaaaataaataaaagtgctatcacc--gacaatggtgcctttaaaatcaatcttcc 320  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||| ||||||||||||||    
T  10908695 gtgcttgaaaataaataaaagcgctatcaccttgacaatggtgccttcaaaatcaatcttcc 10908756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 9432945 - 9432824
Alignment:
Q  54 cttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgacatttctgtagaataattcaggggccatgt 153  Q
    ||||||||||| || || ||||| | ||||||||||||||| ||||| || ||| | |||||| | || | ||||  |||||| |||||||| |||||||    
T  9432945 cttctacttgcgatttcaatcaaaagcattccaaaactatacacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccatgt 9432846  T
Q  154 atccaatggttcctcttgctgc 175  Q
    | ||||| ||||||||||||||    
T  9432845 aaccaattgttcctcttgctgc 9432824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 9453906 - 9453808
Alignment:
Q  80 cattccaaaactatagacatcagctttgcgagatattgtgccgacatttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgt 178  Q
    ||||||||||||||| ||||| || ||| | |||||| | || | ||||  |||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  9453906 cattccaaaactatacacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgt 9453808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 9318394 - 9318271
Alignment:
Q  58 tacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgacatttctgtagaataattcaggggccatgtatcc 157  Q
    |||||||||| |||||||| | ||||||||| ||||| ||||| || |||   |||| |   || | |||| ||||||| |||||||| |||||||||||    
T  9318394 tacttgccatttccatcaaaagcattccaaagctatatacatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatcc 9318295  T
Q  158 aatggttcctcttgctgctgttaa 181  Q
    ||| |||||||| ||||| |||||    
T  9318294 aattgttcctctagctgcagttaa 9318271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 9319908 - 9320031
Alignment:
Q  58 tacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgacatttctgtagaataattcaggggccatgtatcc 157  Q
    |||||||||| |||||||| | |||||| || ||||| |||||||| |||   |||| |   || | |||| ||||||| |||||||| ||||| |||||    
T  9319908 tacttgccatttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatcc 9320007  T
Q  158 aatggttcctcttgctgctgttaa 181  Q
    ||| |||||||||||||| |||||    
T  9320008 aattgttcctcttgctgcagttaa 9320031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 9350292 - 9350348
Alignment:
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaa 181  Q
    |||| ||||||| || ||||| ||||| |||||||| |||||||||||||| |||||    
T  9350292 atttttgtagaacaactcaggagccatatatccaattgttcctcttgctgcagttaa 9350348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 15927233 - 15927177
Alignment:
Q  125 atttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaa 181  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  15927233 atttttgtagaataattcaggagccatgtatccaatcgttcctcttgctgcagttaa 15927177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 9159598 - 9159721
Alignment:
Q  58 tacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgacatttctgtagaataattcaggggccatgtatcc 157  Q
    |||||||||| |||||||| | ||||||||||||||| |||||||| |||   |||| |   || | |||| ||||||| || || || ||||| || ||    
T  9159598 tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataacc 9159697  T
Q  158 aatggttcctcttgctgctgttaa 181  Q
    ||| |||||||||||||| |||||    
T  9159698 aattgttcctcttgctgcagttaa 9159721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 27692423 - 27692549
Alignment:
Q  55 ttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgcgagatattgtgccgacatttctgtagaataattcaggggccatgta 154  Q
    |||||| |||||| ||||| | || ||||||||||||||| |||||||||||| |||| ||  | || |  ||  |||| || || ||||| ||||||||    
T  27692423 ttctacctgccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgtttccaatgttcttgtataacaactcaggagccatgta 27692522  T
Q  155 tccaatggttcctcttgctgctgttaa 181  Q
     || || ||||||||||| ||||||||    
T  27692523 ccccattgttcctcttgccgctgttaa 27692549  T

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