View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_low_6 (Length: 288)
Name: NF10449_low_6
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 2794499 - 2794760
Alignment:
| Q |
18 |
gaatcaacattttcattagatgtaaattcaaaattggactggtaatctttcttaatatctttgtcattattttcagtagattaggtttgcaaaactgaat |
117 |
Q |
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| T |
2794499 |
gaatcaacattttcattagatgtaaattcaaaattggactggtaatctttcttaatatctttgtcattattttcagtagattaggtttgcaaaactgaat |
2794598 |
T |
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| Q |
118 |
tagttttggaaataaattttctctttcacaaagatttcatctatttcctctttcttatctattattgttgatgaagatttcttttcaactatataaatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2794599 |
tagttttggaaataaattttctctttcacaaagatttcatctatttcctctttcttatctattattgttgatgaagatttcttttcaactgtataaatta |
2794698 |
T |
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| Q |
218 |
ctagtgcatgtaaaaaattcattgttgtttcccacaaactagtatagaatctacctttgctt |
279 |
Q |
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| T |
2794699 |
ctagtgcatgtgaaaaattcgttcttgtttcccacaaactagtatagaatctacctttgctt |
2794760 |
T |
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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 48669615 - 48669685
Alignment:
| Q |
18 |
gaatcaacattttcattagatgtaaattcaaaattggactggtaatctttcttaatatctttgtcattatt |
88 |
Q |
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| T |
48669615 |
gaatcaacattttctttagatgttaattcaaaattggactggtaagctttcttagtttctttgtcgttatt |
48669685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 16390315 - 16390368
Alignment:
| Q |
18 |
gaatcaacattttcattagatgtaaattcaaaattggactggtaatctttctta |
71 |
Q |
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| T |
16390315 |
gaatcaacattttctttagatgttaattcaaagttggactggtaagctttctta |
16390368 |
T |
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