View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10449_low_7 (Length: 271)
Name: NF10449_low_7
Description: NF10449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10449_low_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 301562 - 301291
Alignment:
| Q |
1 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
301562 |
gagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatcttcagcttgagggctagaatccctatagaaattatattg |
301463 |
T |
|
| Q |
101 |
aagattggaaccatctgtgattctttgattgaa-tcaaatggaaaagtattggctaacatgactgaagcaaaaggtatgagagaaagaagatgaagttgt |
199 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
301462 |
aagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctaacgtgactgaaccaaaaggtatgagagaaagaagatgaagttgt |
301363 |
T |
|
| Q |
200 |
ttgtgttatggtgttttctggtcctgattctcctcgtgggtttctgaaagagagaagaacgggaaggactac |
271 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
301362 |
ttgtgttatggtgttttcgggttctgattctcctcgtgggtttctgaaagagagaagaacgggaaggactac |
301291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 32799650 - 32799925
Alignment:
| Q |
1 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799650 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
32799749 |
T |
|
| Q |
101 |
aagattggaaccatctgtgattctttgattg-aatcaaatggaaaagtattg---gctaacatgactgaagcaaaag--gtatgagaga---aagaagat |
191 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||| |
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| T |
32799750 |
aagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagat |
32799849 |
T |
|
| Q |
192 |
gaagttgtttgtgttatggtgttttctggtcctgattctcctcgtgggtttctgaaagagagaagaacgggaagga |
267 |
Q |
| |
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|||||||||||||||||||||||||||||| | | |||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
32799850 |
gaagttgtttgtgttatggtgttttctggttcaggttctcctcttgggtttctgagagagagaagaacaggaagga |
32799925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 32565419 - 32565694
Alignment:
| Q |
1 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565419 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
32565518 |
T |
|
| Q |
101 |
aagattggaaccatctgtgattctttgattg-aatcaaatggaaaagtattg---gctaacatgactgaagcaaaag--gtatgagaga---aagaagat |
191 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||| |
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| T |
32565519 |
aagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagat |
32565618 |
T |
|
| Q |
192 |
gaagttgtttgtgttatggtgttttctggtcctgattctcctcgtgggtttctgaaagagagaagaacgggaagga |
267 |
Q |
| |
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|||||||||||||||||||||||||||||| | | |||||||| ||||||||||| ||||| |||||| ||||||| |
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| T |
32565619 |
gaagttgtttgtgttatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaagga |
32565694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 32806604 - 32806879
Alignment:
| Q |
1 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32806604 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
32806703 |
T |
|
| Q |
101 |
aagattggaaccatctgtgattctttgattg-aatcaaatggaaaagtattg---gctaacatgactgaagcaaaag--gtatgagaga---aagaagat |
191 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||| |
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| T |
32806704 |
aagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagat |
32806803 |
T |
|
| Q |
192 |
gaagttgtttgtgttatggtgttttctggtcctgattctcctcgtgggtttctgaaagagagaagaacgggaagga |
267 |
Q |
| |
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||| |||||||||||||||||||||||||| | |||||||||| ||||||||||| |||| ||||||| ||||||| |
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| T |
32806804 |
gaaattgtttgtgttatggtgttttctggttcagattctcctcttgggtttctgagagagggaagaacaggaagga |
32806879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 32815041 - 32815316
Alignment:
| Q |
1 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815041 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
32815140 |
T |
|
| Q |
101 |
aagattggaaccatctgtgattctttgattg-aatcaaatggaaaagtattg---gctaacatgactgaagcaaaag--gtatgagaga---aagaagat |
191 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||| |
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| T |
32815141 |
aagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagat |
32815240 |
T |
|
| Q |
192 |
gaagttgtttgtgttatggtgttttctggtcctgattctcctcgtgggtttctgaaagagagaagaacgggaagga |
267 |
Q |
| |
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|||||||||||||||||||||||||||||| | | |||||||| ||||||||||| ||||| |||||| ||||||| |
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| T |
32815241 |
gaagttgtttgtgttatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaagga |
32815316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 32309416 - 32309141
Alignment:
| Q |
1 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309416 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatcttcagcttgagggcaagaatccctatagaaattatattg |
32309317 |
T |
|
| Q |
101 |
aagattggaaccatctgtgattctttgattg-aatcaaatggaaaagtattg---gctaacatgactgaagcaaaag--gtatgagaga---aagaagat |
191 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||| |
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|
| T |
32309316 |
aagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagat |
32309217 |
T |
|
| Q |
192 |
gaagttgtttgtgttatggtgttttctggtcctgattctcctcgtgggtttctgaaagagagaagaacgggaagga |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| ||||||||||| ||||| |||||| ||||||| |
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| T |
32309216 |
gaagttgtttgtgttatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaagga |
32309141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 28215651 - 28215776
Alignment:
| Q |
1 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||| | |
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| T |
28215651 |
gagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatattctcagcttcagggcaagaatccttatagaaattatatcg |
28215750 |
T |
|
| Q |
101 |
aagattggaaccatctgtgattcttt |
126 |
Q |
| |
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|||||||||||||||| |||| |||| |
|
|
| T |
28215751 |
aagattggaaccatctctgatacttt |
28215776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28220572 - 28220448
Alignment:
| Q |
1 |
gagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctatagaaattatattg |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||| || |||||||||||||||| |
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| T |
28220572 |
gagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatattctcagcttgagggcaagaaaccttatagaaattatattg |
28220474 |
T |
|
| Q |
101 |
aagattggaaccatctgtgattcttt |
126 |
Q |
| |
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|||||||||||||||| ||||||||| |
|
|
| T |
28220473 |
aagattggaaccatctctgattcttt |
28220448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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