View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10450_high_3 (Length: 390)
Name: NF10450_high_3
Description: NF10450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10450_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 43274696 - 43274326
Alignment:
| Q |
1 |
aaggcagtggttaaagaaaccctacgtttacatcctccatttccattactagtcccaagagtaaacacaaaagatatcaaattaaatggttaccacatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43274696 |
aaggcagtggttaaagaaaccctacgtttacatcctccatttccattactagtcccaagagtaaacacacaagatatcaaattaaatggttaccacatta |
43274597 |
T |
|
| Q |
101 |
aagctggcacacatgttattatcaataattggagcatagcaagagaccctacaaattggaatcaacctgaagaattcaagccagagagattcttgaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43274596 |
aagctggcacacatgttattatcaataattggagcatagcaagagaccctacaaattggaatcaacctgaagaattcaagccagagagattcttgaataa |
43274497 |
T |
|
| Q |
201 |
tccaatagatattaaaggaaatgatttgatattgactccatttggagcagggagaaggggttgccctggagtagtgtatgctatagctgccaatgaaatt |
300 |
Q |
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| T |
43274496 |
tccaatagatattaaaggaaatgatttgatattgactccatttggagcagggagaaggggttgccctggagtagtgtatgctatagctgccaatgaaatt |
43274397 |
T |
|
| Q |
301 |
gtgttagccaatcttatacatcaatttgattgggaattacctggtggtgctaaaggattggagatattaga |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43274396 |
gtgttagccaatcttatacatcaatttgattgggaattacctggtggtgctaaaggattggagacattaga |
43274326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 4 - 362
Target Start/End: Complemental strand, 43267428 - 43267070
Alignment:
| Q |
4 |
gcagtggttaaagaaaccctacgtttacatcctccatttccattactagtcccaagagtaaacacaaaagatatcaaattaaatggttaccacattaaag |
103 |
Q |
| |
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| T |
43267428 |
gcagtagttaaagaaaccctacgtttacatccctcaattccattactagtaccaagagaaagcagacaagatatcaaactaaatggacaccacatcaaag |
43267329 |
T |
|
| Q |
104 |
ctggcacacatgttattatcaataattggagcatagcaagagaccctacaaattggaatcaacctgaagaattcaagccagagagattcttgaataatcc |
203 |
Q |
| |
|
||||||||| ||| |||||||| |||| ||| |||||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||| | | |
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| T |
43267328 |
ctggcacacgagtttttatcaatgcttgggccattgcaagagatcctacacattgggatcaacctgaagagttcaagccagagagattcttgaattgttc |
43267229 |
T |
|
| Q |
204 |
aatagatattaaaggaaatgatttgatattgactccatttggagcagggagaaggggttgccctggagtagtgtatgctatagctgccaatgaaattgtg |
303 |
Q |
| |
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||||||| |||||||||| ||||| ||| |||||||||||| || ||||||||||| ||||| | ||| ||||||| |||| |||||| ||||| |
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| T |
43267228 |
aatagatgttaaaggaaaagatttccaggtgattccatttggagctggcagaaggggttgtcctggggcagtttatgctacggctgtcaatgatcttgtg |
43267129 |
T |
|
| Q |
304 |
ttagccaatcttatacatcaatttgattgggaattacctggtggtgctaaaggattgga |
362 |
Q |
| |
|
|| || || ||| ||||||||||| | |||||||||||||||| |||| |||||||||| |
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|
| T |
43267128 |
ttggcaaaccttgtacatcaatttaactgggaattacctggtgctgctgaaggattgga |
43267070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 4 - 362
Target Start/End: Complemental strand, 43287229 - 43286871
Alignment:
| Q |
4 |
gcagtggttaaagaaaccctacgtttacatcctccatttccattactagtcccaagagtaaacacaaaagatatcaaattaaatggttaccacattaaag |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||||||||||| ||||||| || || | ||||||||||| ||||||| ||||||| |||| |
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|
| T |
43287229 |
gcagtagttaaagaaaccctacgtttacatccctcaattccattactagtaccaagagaaagcagacaagatatcaaactaaatggacaccacatcaaag |
43287130 |
T |
|
| Q |
104 |
ctggcacacatgttattatcaataattggagcatagcaagagaccctacaaattggaatcaacctgaagaattcaagccagagagattcttgaataatcc |
203 |
Q |
| |
|
||||||||| ||| |||||||| |||| ||| |||||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||| | | |
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| T |
43287129 |
ctggcacacgagtttttatcaatgcttgggccattgcaagagatcctacacattgggatcaacctgaagagttcaagccagagagattcttgaattgttc |
43287030 |
T |
|
| Q |
204 |
aatagatattaaaggaaatgatttgatattgactccatttggagcagggagaaggggttgccctggagtagtgtatgctatagctgccaatgaaattgtg |
303 |
Q |
| |
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||||||| |||||||||| ||||| ||| |||||||||||| || ||||||||||| ||||| | ||| ||||||| |||| |||||| ||||| |
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| T |
43287029 |
aatagatgttaaaggaaaagatttccaggtgattccatttggagctggcagaaggggttgtcctggggcagtttatgctacggctgtcaatgatcttgtg |
43286930 |
T |
|
| Q |
304 |
ttagccaatcttatacatcaatttgattgggaattacctggtggtgctaaaggattgga |
362 |
Q |
| |
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|| || || ||| ||||||||||| | |||||||||||||||| |||| |||||||||| |
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|
| T |
43286929 |
ttggcaaaccttgtacatcaatttaactgggaattacctggtgctgctgaaggattgga |
43286871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 4 - 344
Target Start/End: Complemental strand, 43308025 - 43307685
Alignment:
| Q |
4 |
gcagtggttaaagaaaccctacgtttacatcctccatttccattactagtcccaagagtaaacacaaaagatatcaaattaaatggttaccacattaaag |
103 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| | || ||||||| ||||||| ||| | | ||||||||| |||| ||||||||||| |||| |
|
|
| T |
43308025 |
gcagtggttaaagaaacattacggttacatcctccaatccccctactagttccaagagaaaatagacaagatatcaccgtaaagggttaccacatcaaag |
43307926 |
T |
|
| Q |
104 |
ctggcacacatgttattatcaataattggagcatagcaagagaccctacaaattggaatcaacctgaagaattcaagccagagagattcttgaataatcc |
203 |
Q |
| |
|
||||||||| || ||||||||| |||| ||| |||||||| || || ||||| ||||||||||||| ||||| || |||||||||||||||| | | |
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| T |
43307925 |
ctggcacacgagtaattatcaatgcttgggccattgcaagagatcccgcatattgggatcaacctgaagagttcaaacctgagagattcttgaatagttc |
43307826 |
T |
|
| Q |
204 |
aatagatattaaaggaaatgatttgatattgactccatttggagcagggagaaggggttgccctggagtagtgtatgctatagctgccaatgaaattgtg |
303 |
Q |
| |
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||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||| |||| |||||||| | |||||||||| ||||| |
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| T |
43307825 |
aatagatattaaagggaatgatttccatttgattccatttggagcagggagaaggggttgtcctgggatagtttatgctatggttgccaatgaacttgtg |
43307726 |
T |
|
| Q |
304 |
ttagccaatcttatacatcaatttgattgggaattacctgg |
344 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||||||||| |
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|
| T |
43307725 |
ttagccaaccttgtacatcaatttaattgggaattacctgg |
43307685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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