View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10450_low_1 (Length: 528)
Name: NF10450_low_1
Description: NF10450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10450_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 3 - 270
Target Start/End: Complemental strand, 25063529 - 25063262
Alignment:
| Q |
3 |
aacactattcttaggtttcaaattggcatccctcaaatcttcctcggtgatcaaaacctttgcaccgtagaataactcagttgtagctggagaaaccttg |
102 |
Q |
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| T |
25063529 |
aacactattcttaggtttcaaattagcatccctcaaatcttcctcagtgatcaaaacctttgcaccgtagaataactcagttgtagctggagaaaccttg |
25063430 |
T |
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| Q |
103 |
gcattagatatcactctcaattcatcaacatctccgatcaccgccgatttccttcgagggtttgacctatcgaaactcctcctcctccgatccgaatagt |
202 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063429 |
gcattagatatcactctcaattcatcaacatctccaatcaccgctgatttccttcgagggtttgacctatcgaaactcctcctcctccgatccgaatagt |
25063330 |
T |
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| Q |
203 |
aatgctttgtttcagctgaaccaccaggatgtagtccaccaccactactttccaaattctccaccacc |
270 |
Q |
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| T |
25063329 |
aatgctttgtttcagctgaatcaccaggatgtagtccaccaccactactttccaaattctccaccacc |
25063262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 303 - 524
Target Start/End: Complemental strand, 25063229 - 25063008
Alignment:
| Q |
303 |
aaccaaaaccctatcatcatttatagcaaccattggcgaaaacctcgaacacgttttcccaatcaaataaccatcccaagaagcacgaggagcatcaaat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063229 |
aaccaaaaccctatcatcatttatagcaaccattggcgaaaacctcgaacacgttttcccaatcaaataaccatcccaagaagcacgaggagcatcaaat |
25063130 |
T |
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| Q |
403 |
gaaaacctcgaatcatccacggataacctaggatcagtatcacatgatcttctacccaatgataaaccatattctccaacctcagattgcgtttctctca |
502 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063129 |
gaaaacctcgaatcatctacggataacctaggatcagtatcacatgatcttctacacaatgataaaccatattctccaacctcagattgcgtttctctca |
25063030 |
T |
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| Q |
503 |
aatttctcctcctttgcttctc |
524 |
Q |
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|||||||||||||||||||||| |
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| T |
25063029 |
aatttctcctcctttgcttctc |
25063008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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