View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10450_low_13 (Length: 268)
Name: NF10450_low_13
Description: NF10450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10450_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 39841762 - 39841524
Alignment:
| Q |
19 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatggtaaagtagctgagtgcaaaatggtagactacataatattccttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39841762 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatg-taaagtagctgagtgcaaaatggtagactaaataatattccttc |
39841664 |
T |
|
| Q |
119 |
taagacaaagaat-tatattcacagcccaagcatcaagcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagcg |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39841663 |
taagacaaagaatatatattcacagcccaagcatcaggcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagcg |
39841564 |
T |
|
| Q |
218 |
gatctccaccaacccgcaacccctatccggacacaggttc |
257 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||| |
|
|
| T |
39841563 |
gatctccaccaccccgcaacccctatctggacaaaggttc |
39841524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 39846815 - 39846576
Alignment:
| Q |
19 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatggtaaagtagctgagtgcaaaatggtagactacataatattccttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846815 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacacgaaatg-taaagtagctgagtgcaaaatggtagactacataatattccttc |
39846717 |
T |
|
| Q |
119 |
taagacaaagaattatat--tcacagcccaagcatcaagcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
216 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846716 |
taagacagagaattatatattcacagcccaagcatcaggcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
39846617 |
T |
|
| Q |
217 |
ggatctccaccaacccgcaacccctatccggacacaggttc |
257 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
39846616 |
ggatctccaccaccccgcaacccctatccggacaaaggttc |
39846576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 44796550 - 44796789
Alignment:
| Q |
19 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatggtaaagtagctgagtgcaaaatggtagactacataatattccttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44796550 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcaaatgaaatg-taaagtagctgagtgcaaaatggtagactacataatattccttc |
44796648 |
T |
|
| Q |
119 |
taagacaaagaattata--ttcacagcccaagcatcaagcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
216 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44796649 |
taagacagagaattatatattcacagcccaagcatcaagcctgtacaattcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
44796748 |
T |
|
| Q |
217 |
ggatctccaccaacccgcaacccctatccggacacaggttc |
257 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
44796749 |
ggatctccaccaccccgcaacccctatccggacaaaggttc |
44796789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 35163633 - 35163393
Alignment:
| Q |
19 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatggtaaagtagctgagtgcaaaatggtagactacataatattccttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35163633 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatg-taaagtagctaagtgcaaaatggtagactacataatattccttc |
35163535 |
T |
|
| Q |
119 |
taagacaaagaattatat--tcacagcccaagcatcaagcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35163534 |
taagacaaagaattatatattcacagcccaagcatcaagcctgtacagtgcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
35163435 |
T |
|
| Q |
217 |
ggatctccaccaaccc-gcaacccctatccggacacaggttc |
257 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| | |||||| |
|
|
| T |
35163434 |
ggatctccaccaccccggcaacccctatccggataaaggttc |
35163393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University