View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10450_low_17 (Length: 226)
Name: NF10450_low_17
Description: NF10450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10450_low_17 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1347565 - 1347328
Alignment:
| Q |
1 |
agatgtatacttggttttttcttaattttctatacctgctactattggatttgatggtttgaaaagtataggttttgtctccttatacaaatcaatggtc |
100 |
Q |
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| T |
1347565 |
agatatatacttggtgttttcttaattttctatacctgctactattggatttgatggtttgaaaagtataggttttgtctccttatacaaatcaatggtc |
1347466 |
T |
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| Q |
101 |
caacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaacaatttgtggctg------ |
194 |
Q |
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| T |
1347465 |
caacaattctagggtacacttaataactacgcgatatatgctttgcttagcatttttcgtaaccacgttgcttgaatagaacaatttgttgctgatatat |
1347366 |
T |
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| Q |
195 |
------tgtccatatttcttgcattcatgacactgctt |
226 |
Q |
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| T |
1347365 |
atattatgtccatatttcttgcattcatgacactgctt |
1347328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 8675681 - 8675798
Alignment:
| Q |
49 |
atttgatggtttgaaaagtataggttttgtctccttatacaaatcaat-ggtccaacaattctagggtgcacttaataactacgcgatatatgcattgct |
147 |
Q |
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| T |
8675681 |
atttgacggtttgaacaatacaggcttggtctccttatacaaatcaaacggtcttccaattctagggtgcacttgataactatgcaatatatgttttgct |
8675780 |
T |
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| Q |
148 |
tagcatttttcgtaacca |
165 |
Q |
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| T |
8675781 |
tagcattttctgtaacca |
8675798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 9619327 - 9619439
Alignment:
| Q |
83 |
ttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaac |
182 |
Q |
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| T |
9619327 |
ttatacaaataaatggtcttctaattatagggtgcacttaataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagtaaaat |
9619426 |
T |
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| Q |
183 |
aatttgtggctgt |
195 |
Q |
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| T |
9619427 |
aatttgtggctgt |
9619439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 15785105 - 15785176
Alignment:
| Q |
58 |
tttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtgcacttaataacta |
129 |
Q |
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| T |
15785105 |
tttgaacaatataggtttggtctccttataccaattaatggtccaccaattctagggtgcacttgataacta |
15785176 |
T |
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