View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10450_low_2 (Length: 450)
Name: NF10450_low_2
Description: NF10450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10450_low_2 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Original strand, 1346858 - 1347293
Alignment:
| Q |
15 |
aatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatgaaagta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1346858 |
aatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttacaaggcttaaaacaagaatttgagctgattgaattttgcaaagatgaaagta |
1346957 |
T |
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| Q |
115 |
ttcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346958 |
ttcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatg |
1347057 |
T |
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| Q |
215 |
aatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatatgcaagcatccttggagtcacatgaaatgcgaat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1347058 |
aatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatttgcaagcatccttggagtcacatgaaatgcgaat |
1347157 |
T |
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| Q |
315 |
gaaagaaagggtcaagtgacacaaccaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaaaactaa |
414 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347158 |
gaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaaaactaa |
1347257 |
T |
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| Q |
415 |
agagggaaaaagttcagaggaagaactaactcaagc |
450 |
Q |
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| T |
1347258 |
agagggcaaaagttcagaggtagaactaactcaagc |
1347293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 8675916 - 8675805
Alignment:
| Q |
292 |
ttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaaccaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaa |
391 |
Q |
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|||||||| ||||||||| ||||| |||||| ||||||||||||| | | ||| || || |||||||||||| ||||||||| ||||||||||| || |
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| T |
8675916 |
ttggagtcgcatgaaatgttaatgagtgaaagg-tcaagtgacacaatcgaacaaacatttacagctccaacaaatctgacaaataagggatttgtgtaa |
8675818 |
T |
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| Q |
392 |
aggaaggtagacc |
404 |
Q |
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||||||||||||| |
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| T |
8675817 |
aggaaggtagacc |
8675805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 349
Target Start/End: Complemental strand, 19807748 - 19807579
Alignment:
| Q |
178 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
277 |
Q |
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|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||| ||||||||| | | || ||||| ||||| |
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| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtc-aaaagatctgaacacagcgacctagaatg |
19807650 |
T |
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| Q |
278 |
atatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaaccaatcaagca |
349 |
Q |
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| T |
19807649 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaa-agtcaagtgacacaatcgatcaagca |
19807579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 9619623 - 9619569
Alignment:
| Q |
354 |
aagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
408 |
Q |
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|||||||| |||| ||||||||| || ||||||||||||||| |||||||||||| |
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| T |
9619623 |
aagctccagcaaatctgacaaataagtgatttgtgcaaaggagggtagaccgcaa |
9619569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 349
Target Start/End: Original strand, 19968673 - 19968858
Alignment:
| Q |
160 |
ataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatctta |
259 |
Q |
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||||||||||| |||| |||||||| ||||| || || |||| ||| || ||| ||||||||| | ||| |||||||||||||| ||||| |||| | |
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| T |
19968673 |
ataatataacataaaag-aagtcatggagaaagttatgcgcacacaaacaagttgattcaattacgccgtagcagcaattcaagagt-aaaaatatctaa |
19968770 |
T |
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| Q |
260 |
tctcaaagaccttgaatgatatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaaccaatcaagca |
349 |
Q |
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| T |
19968771 |
acacaataagcataaatgatttgcaagcatccttggattcctatgaaatgcaaatgagtg-aagggtcaagtgaca-aaccaatcaagca |
19968858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 19807927 - 19807813
Alignment:
| Q |
35 |
agcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatgaaagtat---tcatgattttttacga |
131 |
Q |
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||||||||||| ||||| | |||||||| ||||||||| | |||||||| |||||||| || |||| |||||||||| |||| |||||| |||| |
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| T |
19807927 |
agcagatccaacataacggacaaggttgcgtggcttaaaaagacaatttgagttgattgaacatttcaaagatgaaagtatttgtcattatttttcacga |
19807828 |
T |
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| Q |
132 |
atggatacgttggtc |
146 |
Q |
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||||| | ||||||| |
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| T |
19807827 |
atggacaagttggtc |
19807813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 40036927 - 40036781
Alignment:
| Q |
17 |
tatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatgaaagtatt |
116 |
Q |
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||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||| ||| |
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| T |
40036927 |
tatgctcaaaacacatggagcaaatccaatttaacgaaaaaggttgcaagacttaaaacaacaatttgagctgattgaattttacaaagatgaaagcatt |
40036828 |
T |
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| Q |
117 |
catgattttttacgaatggatacgttggtcaatgaagcgaagaataa |
163 |
Q |
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| T |
40036827 |
catgattttttacgaatggatatgttggtcaataaaaccaagaataa |
40036781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 40031583 - 40031340
Alignment:
| Q |
17 |
tatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatgaaagtatt |
116 |
Q |
| |
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||||||||||||| ||| |||| ||||| ||||| ||||||||||||||| |||||||||| |||||||||| |||||||||| |||| || ||| |||| |
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| T |
40031583 |
tatgctcaaaacacatggagcaaatccagtttaaagaaaaaggttgcaagacttaaaacaacaatttgagcttattgaattttacaaagataaaaatatt |
40031484 |
T |
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| Q |
117 |
catgattttttacgaatggatacgttggtcaatgaagcgaagaa---------taatataacagaaaaacaagtcatgaagaaaattgtgtatacactaa |
207 |
Q |
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| T |
40031483 |
cctgattttttacaaatagatacattggtcaataaaccgaagaataacaatggtaatacaacagaaaaacaagtcatggagaagattatgcaaacactat |
40031384 |
T |
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| Q |
208 |
cgagatgaatcaattacgtcatagaagcaattcaagagtcaaaa |
251 |
Q |
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| T |
40031383 |
caagatgattcaattacgccatagcagcatctcaagagtcaaaa |
40031340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 32241112 - 32241221
Alignment:
| Q |
295 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaaccaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
393 |
Q |
| |
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||||||||||||||| |||||| |||||| || ||||||| || | | ||| || || ||||||| ||||| |||||| || |||||||||||||||| |
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| T |
32241112 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagctccttcaaaatctgacagatgagggatttgtgcaaag |
32241210 |
T |
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| Q |
394 |
gaaggtagacc |
404 |
Q |
| |
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|| |||||||| |
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| T |
32241211 |
gatggtagacc |
32241221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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