View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10450_low_3 (Length: 434)

Name: NF10450_low_3
Description: NF10450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10450_low_3
NF10450_low_3
[»] chr6 (10 HSPs)
chr6 (213-425)||(15398104-15398316)
chr6 (213-425)||(15409891-15410103)
chr6 (17-143)||(15397914-15398040)
chr6 (17-143)||(15409701-15409827)
chr6 (295-418)||(7813986-7814109)
chr6 (295-425)||(7871211-7871341)
chr6 (312-418)||(7806765-7806871)
chr6 (312-424)||(14439219-14439331)
chr6 (294-358)||(7859922-7859986)
chr6 (294-385)||(14436121-14436212)
[»] chr7 (1 HSPs)
chr7 (295-419)||(19317659-19317783)
[»] chr1 (1 HSPs)
chr1 (297-416)||(37997596-37997715)
[»] chr3 (1 HSPs)
chr3 (297-425)||(43694521-43694649)
[»] chr4 (1 HSPs)
chr4 (297-425)||(14017658-14017786)
[»] scaffold1089 (1 HSPs)
scaffold1089 (294-425)||(1577-1708)
[»] chr5 (1 HSPs)
chr5 (287-410)||(32430473-32430596)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 213 - 425
Target Start/End: Original strand, 15398104 - 15398316
Alignment:
Q  213 atcgttcactttgtttgatattaataggtgccgcgacgctctcccgaaccattccttccttctcaggaatcaagagcagctatggatagaatcagcggat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15398104 atcgttcactttgtttgatattaataggtgccgcgacgctctcccgaaccattccttccttctcaggaatcaagagcagctatggatagaatcagcggat 15398203  T
Q  313 taccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtggaccccactcttctattc 412  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15398204 taccagatgagttattgtgtcacatactctcttttctcccaacaaaatttgcttttactacaacccttctttctaagcggtggaccccactcttctattc 15398303  T
Q  413 actccccgttctc 425  Q
    |||||||||||||    
T  15398304 actccccgttctc 15398316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 213 - 425
Target Start/End: Original strand, 15409891 - 15410103
Alignment:
Q  213 atcgttcactttgtttgatattaataggtgccgcgacgctctcccgaaccattccttccttctcaggaatcaagagcagctatggatagaatcagcggat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15409891 atcgttcactttgtttgatattaataggtgccgcgacgctctcccgaaccattccttccttctcaggaatcaagagcagctatggatagaatcagcggat 15409990  T
Q  313 taccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtggaccccactcttctattc 412  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15409991 taccagatgagttattgtgtcacatactctcttttctcccaacaaaatttgcttttactacaacccttctttctaagcggtggaccccactcttctattc 15410090  T
Q  413 actccccgttctc 425  Q
    |||||||||||||    
T  15410091 actccccgttctc 15410103  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 15397914 - 15398040
Alignment:
Q  17 tttattagggttttcaatatgtttgataattgatttgatgaattgtttcatctttctagattccatttgtgtttcgcatacctgannnnnnnnaagtagc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  15397914 tttattagggttttcaatatgtttgataattgatttgatgaattgtttcatctttctagattccatttgtgtttcgcatacctgattttttttaagtagc 15398013  T
Q  117 tgtaatgtaataatcatagtaattttc 143  Q
    |||||||||||||||||||||||||||    
T  15398014 tgtaatgtaataatcatagtaattttc 15398040  T

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Target: chr6; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 15409701 - 15409827
Alignment:
Q  17 tttattagggttttcaatatgtttgataattgatttgatgaattgtttcatctttctagattccatttgtgtttcgcatacctgannnnnnnnaagtagc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  15409701 tttattagggttttcaatatgtttgataattgatttgatgaattgtttcatctttctagattccatttgtgtttcgcatacctgattttttttaagtagc 15409800  T
Q  117 tgtaatgtaataatcatagtaattttc 143  Q
    |||||||||||||||||||||||||||    
T  15409801 tgtaatgtaataatcatagtaattttc 15409827  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 418
Target Start/End: Original strand, 7813986 - 7814109
Alignment:
Q  295 tggatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtg 394  Q
    |||||||||||||||  ||||| ||||||||||||| | |||| ||||||||||||||||| ||  | |||||  |||||||| | ||||| ||||| ||    
T  7813986 tggatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttccaagcgatg 7814085  T
Q  395 gaccccactcttctattcactccc 418  Q
    ||||  ||||| ||||||||||||    
T  7814086 gaccggactctgctattcactccc 7814109  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 425
Target Start/End: Original strand, 7871211 - 7871341
Alignment:
Q  295 tggatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtg 394  Q
    |||| ||||||||  | ||||| |||||||| |||| | |||| |||||||| |||||||| ||  | ||||| ||||||||||||||||| || |||||    
T  7871211 tggacagaatcagtagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaacggtg 7871310  T
Q  395 gaccccactcttctattcactccccgttctc 425  Q
    || |||||| | |||||||||||| ||||||    
T  7871311 gatcccactatgctattcactccctgttctc 7871341  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 418
Target Start/End: Complemental strand, 7806871 - 7806765
Alignment:
Q  312 ttaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtggaccccactcttctatt 411  Q
    ||||||||||||||| ||  | |||| ||||||||||||| ||| ||  | |||||||||||  || ||||||| |||||||||||| |||||| |||||    
T  7806871 ttaccagatgagttactgctttacattctctcttttctccaaaccaaactggcttttactacgtccattctttccaagcggtggaccgcactctgctatt 7806772  T
Q  412 cactccc 418  Q
    |||||||    
T  7806771 cactccc 7806765  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 14439331 - 14439219
Alignment:
Q  312 ttaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtggaccccactcttctatt 411  Q
    ||||| ||||| ||||| ||| |||||||||||||||| || || ||  | ||||| ||||| |   ||||||| ||||||||||||||||| ||| | |    
T  14439331 ttacctgatgaattattatgtcacatactctcttttcttcccaccaaaatcgctttcactaccagagttctttcgaagcggtggaccccacttttccact 14439232  T
Q  412 cactccccgttct 424  Q
    ||||| |||||||    
T  14439231 cactcaccgttct 14439219  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 7859922 - 7859986
Alignment:
Q  294 atggatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaa 358  Q
    ||||||||||||| |   |||||||  |||||||||||| |||| ||||||||||| ||||||||    
T  7859922 atggatagaatcaacaatttaccagtcgagttattgtgtcacatcctctcttttcttccaacaaa 7859986  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 14436212 - 14436121
Alignment:
Q  294 atggatagaatcagcggattaccagatgagttattgtgtaacatactctcttttc-tcccaacaaattttgcttttactacaacccttctttc 385  Q
    |||||||||||||| |  ||||| ||||| ||||| ||| ||||||||||||||| ||||| ||||  | ||||| ||||| |||||||||||    
T  14436212 atggatagaatcagtgacttacccgatgaattattatgtcacatactctcttttcttcccatcaaa-atcgctttcactaccacccttctttc 14436121  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 295 - 419
Target Start/End: Complemental strand, 19317783 - 19317659
Alignment:
Q  295 tggatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtg 394  Q
    |||||||||| ||||  ||||||||||||||||||  | |||| ||||||||||||||||||||  | |||||||||||| || ||||||| ||||| ||    
T  19317783 tggatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactacagccattctttccaagcgttg 19317684  T
Q  395 gaccccactcttctattcactcccc 419  Q
    ||||| ||||| |||||||||||||    
T  19317683 gacccaactctgctattcactcccc 19317659  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 416
Target Start/End: Complemental strand, 37997715 - 37997596
Alignment:
Q  297 gatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtgga 396  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||||| ||||  ||  | ||||||||||||||  ||||||| ||||||||||    
T  37997715 gatagaatcagcgatttaccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaactgttctttcaaagcggtgga 37997616  T
Q  397 ccccactcttctattcactc 416  Q
    ||| ||||| || |||||||    
T  37997615 ccctactctgctgttcactc 37997596  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 43694649 - 43694521
Alignment:
Q  297 gatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtgga 396  Q
    |||||| ||||||  |||||||||||  |||||||| |||||||||||||| | || || |  || ||||| || || ||  ||||||| ||||||||||    
T  43694649 gatagattcagcgagttaccagatgaaatattgtgtcacatactctcttttattccgaccatattcgctttgaccaccactgttctttcaaagcggtgga 43694550  T
Q  397 ccccactcttctattcactccccgttctc 425  Q
    |||||||||||||||||||| | ||||||    
T  43694549 ccccactcttctattcactcgctgttctc 43694521  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 425
Target Start/End: Original strand, 14017658 - 14017786
Alignment:
Q  297 gatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggtgga 396  Q
    |||||||| ||||  ||| |||||||||||||| |  ||||||| | |||||||||||||||| ||||||| |||||| || ||||||| ||  ||||||    
T  14017658 gatagaattagcgatttatcagatgagttattgcggcacatactttgttttctcccaacaaatattgctttcactacatccgttctttcgaaaaggtgga 14017757  T
Q  397 ccccactcttctattcactccccgttctc 425  Q
    ||  ||| | ||||| |||||| ||||||    
T  14017758 ccaaactatgctatttactccctgttctc 14017786  T

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Target: scaffold1089 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 425
Target Start/End: Complemental strand, 1708 - 1577
Alignment:
Q  294 atggatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttctaagcggt 393  Q
    ||||||||||||||    ||||| ||||| ||||| ||| |||||||||||||||| || || ||  | ||||| ||||| ||  ||||||| |||||||    
T  1708 atggatagaatcagtaacttacctgatgaattattatgtcacatactctcttttcttcccaccaaaatcgctttcactaccacagttctttcgaagcggt 1609  T
Q  394 ggaccccactcttctattcactccccgttctc 425  Q
    |||||||||| ||| | |||||| || |||||    
T  1608 ggaccccacttttccactcactcaccattctc 1577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 410
Target Start/End: Complemental strand, 32430596 - 32430473
Alignment:
Q  287 agcagctatggatagaatcagcggattaccagatgagttattgtgtaacatactctcttttctcccaacaaattttgcttttactacaacccttctttct 386  Q
    ||||||| | |||||||||||||| |||||  ||||||||||| || |||| ||||||||||| || || ||  |||| || ||||| |  ||||| ||     
T  32430596 agcagctttcgatagaatcagcggcttacctaatgagttattgcgtcacattctctcttttcttccgaccaaacttgccttcactaccatgcttctctcg 32430497  T
Q  387 aagcggtggaccccactcttctat 410  Q
    ||| ||||||||||||||| ||||    
T  32430496 aagaggtggaccccactctcctat 32430473  T

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