View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10450_low_7 (Length: 377)
Name: NF10450_low_7
Description: NF10450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10450_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 55163703 - 55163359
Alignment:
| Q |
19 |
aactgctcatgtaaatccaatcagagtggttacaattctccctgagaactcggactggtagggtttacaaagaaaggttctagtgaaaagttaaggaggt |
118 |
Q |
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| T |
55163703 |
aactgctcatgtaaatccaatcagagtggttacaattctccctgagaactcggactggtagggtttacaaagaaaggttctagtgaa--gttaaggaggt |
55163606 |
T |
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| Q |
119 |
tcataaataaaaattaagtcacagtgtcacagggacatgtttagtttcttcacctctacatagagagaaagttgaatctatagtcttgttgcgatactcg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55163605 |
tcataaataaaaattaagtcacagtgtcacagggacatgtttagtttcttcacctctacatagagagaaagttgaatttatagtcttgttgcgatactcg |
55163506 |
T |
|
| Q |
219 |
accctaattctatattctcctaagaatccataaaagctatttgaaccatgctcatctgtgataccttgtacagaactagtttgccactcttgaagaagtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55163505 |
accctaattctatattctcctaagaatccataaaagctatgtgaaccatgctcatctgtgataccttgtacagaactagtttgccactcttgaagaagtt |
55163406 |
T |
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| Q |
319 |
tatccaccacatcacctgatggtaagttgttgaaatcattgtctgtg |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55163405 |
tatccaccacatcacctgatggtaagttgttgaaatcattgtctgtg |
55163359 |
T |
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