View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10450_low_9 (Length: 300)
Name: NF10450_low_9
Description: NF10450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10450_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 38128313 - 38128065
Alignment:
| Q |
19 |
acagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatatttttataagnnnnnnnnnnnnng-ttcaagcttgagcttcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38128313 |
acagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatatttttataagaaaaaataaaaaaaattcaagcttgagcttcat |
38128214 |
T |
|
| Q |
118 |
cattattagcaagtaaaacctaagtttcaagtgttttctcaattcaactcattcatactcttacatgcatactactattttgaaaagattacaaagtaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38128213 |
cattattagcaagtaaaacctaagtttcaagtgttttctcaattcaactcattcatactcttacatgcatactactattttgaaaagattacaaagtaat |
38128114 |
T |
|
| Q |
218 |
cacaggtcaaagttcagtccattctattgaatatcttccatcattactt |
266 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38128113 |
cacaagtcaaagttcagtccattctattgaatatcttccatcattactt |
38128065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 45266991 - 45267058
Alignment:
| Q |
103 |
aagcttgagcttcatcattattagcaagtaaaacctaagtttcaagtgttttctcaattcaactcatt |
170 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| | |||||| ||||| ||||| |
|
|
| T |
45266991 |
aagcttgagcttcatcttttttagcaagtaaaacctaagtttcaagcgcgttctcagttcaattcatt |
45267058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 13090293 - 13090351
Alignment:
| Q |
22 |
gatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatattttt |
80 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
13090293 |
gatatgtggaatagaaagttttaaacttcttaacttaatcctatgattccaatcttttt |
13090351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 8048055 - 8048018
Alignment:
| Q |
263 |
actttatcccggtaatattatctctttgttcttgtttc |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
8048055 |
actttattccggtaatattatctctttgtttttgtttc |
8048018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18336916 - 18336855
Alignment:
| Q |
19 |
acagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatattttt |
80 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
18336916 |
acagatatgtggaatagaaagttttaaacttcttaacttaatcctatgattccaatcttttt |
18336855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 26614461 - 26614519
Alignment:
| Q |
22 |
gatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatattttt |
80 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
26614461 |
gatatgtggaatagaaagttttaaacttcttaacttaatcctatgattccaatcttttt |
26614519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University