View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10451_high_1 (Length: 635)

Name: NF10451_high_1
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10451_high_1
NF10451_high_1
[»] chr3 (8 HSPs)
chr3 (18-626)||(36149024-36149632)
chr3 (18-303)||(36083127-36083412)
chr3 (520-604)||(36083446-36083533)
chr3 (18-88)||(36173497-36173567)
chr3 (444-604)||(36149636-36149799)
chr3 (18-89)||(36160186-36160257)
chr3 (350-447)||(36083456-36083556)
chr3 (384-447)||(36149759-36149822)
[»] chr6 (2 HSPs)
chr6 (234-604)||(26527381-26527763)
chr6 (384-447)||(26527358-26527421)
[»] chr7 (1 HSPs)
chr7 (18-76)||(10489715-10489773)
[»] chr2 (2 HSPs)
chr2 (18-78)||(17454712-17454772)
chr2 (18-88)||(17453749-17453819)


Alignment Details
Target: chr3 (Bit Score: 597; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 36149024 - 36149632
Alignment:
Q  18 tttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatttgcagcacgtaaacgggtcaagtgacctg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36149024 tttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatttgcagcacgtaaacgggtcaagtgacctg 36149123  T
Q  118 gtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36149124 gtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctc 36149223  T
Q  218 agcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36149224 agcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagag 36149323  T
Q  318 tcattttcttttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttcttctttgtcgtctattttcagtg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36149324 tcattttcttttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttcttctttgtcgtctattttcagtg 36149423  T
Q  418 cgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtgaaggagg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36149424 cgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccattgtgtgtggaattacttcgacaccatgcagtggtggcggcggtgaaggagg 36149523  T
Q  518 cggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgtgtaattgacaagt 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36149524 cggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcacatgtgtaattgacaagt 36149623  T
Q  618 tcttcttct 626  Q
     ||||||||    
T  36149624 gcttcttct 36149632  T

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Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 36083127 - 36083412
Alignment:
Q  18 tttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatttgcagcacgtaaacgggtcaagtgacctg 117  Q
    |||||||| |||| ||||||||| |||||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36083127 tttttgtgacgcacataacgatgtaaaccatatttgatggctacacgtgcaagtttttcagtgtcgacatttgcagcacgtaaacgggtcaagtgacctg 36083226  T
Q  118 gtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctc 217  Q
    |||| || ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  36083227 gtgccagcgttggatatgcatgaaattgttccgttgttatcattaggttaagaactgaatcacctatgtattccaaacgctcataagataagccattctc 36083326  T
Q  218 agcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgca 303  Q
    |||||| |||||||  |||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  36083327 agcaccgtaagtacagtgagtgaaagcctcttctagcaatagtatgttcttaaattcgtattctagaattgcttccacttcatgca 36083412  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 520 - 604
Target Start/End: Original strand, 36083446 - 36083533
Alignment:
Q  520 gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt 604  Q
    |||||||| ||||| ||||| | ||||||||||||   ||||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  36083446 gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt 36083533  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 36173497 - 36173567
Alignment:
Q  18 tttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatt 88  Q
    |||||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| ||||||| ||| |||||    
T  36173497 tttttgtgacgcaaataacgatccaatccatgtttgatagccacacgtgccagcttttcagagtccacatt 36173567  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 604
Target Start/End: Original strand, 36149636 - 36149799
Alignment:
Q  444 tctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtg------aaggaggcggagaatcattttccatca 537  Q
    |||||||||| ||||| ||||||| |||||||||| ||||| ||  | |||||  ||||||| ||||      ||||||||||||||||| ||||| |||    
T  36149636 tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttcttgcagctgtggcggtggtggtggtgaaggaggcggagaatcactttccttca 36149735  T
Q  538 tgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt 604  Q
    |  | ||||||| || | | || ||||||   ||||||||||| |||||||||||||||||| ||||    
T  36149736 tttgcacttctttttctagcttgggagag---tcttcttctttctcatctattttgagtgcacatgt 36149799  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 36160186 - 36160257
Alignment:
Q  18 tttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacattt 89  Q
    |||||||| ||||||||||||| ||| ||||| ||||| ||||| |||||||| ||||||| ||| ||||||    
T  36160186 tttttgtgacgcaaataacgatccaacccatgattgatagccactcgtgccagcttttcagagtccacattt 36160257  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 447
Target Start/End: Original strand, 36083456 - 36083556
Alignment:
Q  350 ttccttcacgtgtgctacttcttgtccttgattaggagagtg---ttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttct 446  Q
    |||||||| |||| || ||||||||||||| || ||||||||   |||||||||||| | |||||| ||||| |||||||||| ||  ||||||| ||||    
T  36083456 ttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttct 36083555  T
Q  447 t 447  Q
    |    
T  36083556 t 36083556  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 36149759 - 36149822
Alignment:
Q  384 ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt 447  Q
    ||||||| ||||||||| || |||||||| ||||| |||||||||| ||  |||||||||||||    
T  36149759 ggagagtcttcttctttctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt 36149822  T

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Target: chr6 (Bit Score: 161; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 234 - 604
Target Start/End: Complemental strand, 26527763 - 26527381
Alignment:
Q  234 tgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttttgtct 333  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  |||||||||||| |||||||||| |||||    
T  26527763 tgagtgaaagcctcttctagtaatagtttgttcttgaattcgtattcaagaatggcttccacttcatgcggtggtggtggagaatcattttcttctgtct 26527664  T
Q  334 ctgcatcagtctcatcttccttcacgtgtgctacttctt---------gtccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgt 424  Q
    | |||||| |||||| |||||||| |||| || ||||||         ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  26527663 ccgcatcattctcattttccttcatgtgttcttcttcttcttcttcttgtccttgcttaggagactgttcttctttgtcgtctattttcagtgcgcatgt 26527564  T
Q  425 ttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcg------gcggtgaaggaggc 518  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| ||  ||| |||  ||||||      | ||||||||||||    
T  26527563 ttggatgatgagtgcttcttctttgtgaacatgagcttccatggtgtggggaatcacttccacttcatacagcagtggcggtggtagtggtgaaggaggc 26527464  T
Q  519 ggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt 604  Q
    ||| ||||| ||||  ||||| | ||||||| || | | || ||||||||   ||||||| | |||||||||||||||||| ||||    
T  26527463 ggaaaatcactttcattcatgtgcacttctttttctagcttgggagagtg---ttcttctatctcatctattttgagtgcacatgt 26527381  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 447
Target Start/End: Complemental strand, 26527421 - 26527358
Alignment:
Q  384 ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt 447  Q
    ||||||||||||||| | || |||||||| ||||| |||||||||| ||  |||||||||||||    
T  26527421 ggagagtgttcttctatctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt 26527358  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 10489773 - 10489715
Alignment:
Q  18 tttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttc 76  Q
    ||||||||||||||||||| || ||| ||||| ||||| ||||||||||||||||||||    
T  10489773 tttttgtgtcgcaaataaccatccaacccatgtttgatagccacacgtgccagtttttc 10489715  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 17454772 - 17454712
Alignment:
Q  18 tttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcag 78  Q
    ||||||||| |||||||||||| ||| ||||| ||||| || |||| ||||||||||||||    
T  17454772 tttttgtgttgcaaataacgatccaacccatgtttgatagctacacatgccagtttttcag 17454712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 17453749 - 17453819
Alignment:
Q  18 tttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatt 88  Q
    |||||||||||||||||||||  ||| ||||| ||||| |||||||||||  |||||| || ||| |||||    
T  17453749 tttttgtgtcgcaaataacgacccaacccatgtttgatagccacacgtgcgtgttttttagagtccacatt 17453819  T

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