View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10451_high_14 (Length: 256)
Name: NF10451_high_14
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10451_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4858431 - 4858207
Alignment:
| Q |
1 |
caatcgaagggtacaccttatagatttctcagcttttatttttagcttcatcattttc--cggtcatggacacgttatatttgttgtgcacacacattat |
98 |
Q |
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| T |
4858431 |
caattgaagggtaatccttatagatcgctcagttttcatttttagcttcatcattttttacggtgactgacacattatatttgttgcgcacagacattac |
4858332 |
T |
|
| Q |
99 |
agtcgaataatttgaattagtaacaaatgtataagaataattaattcccttatttttgcaaaaactgcaacattatatttgttgtgcacacactggggaa |
198 |
Q |
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| T |
4858331 |
attcgaataatttgaattagtaacaaatgtataagaataattaattcccttatttctgcaaaaactgc---------------gtgcacacactggggaa |
4858247 |
T |
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| Q |
199 |
tagttgaagtttattttcttcagtgttcttgtgtaaatac |
238 |
Q |
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| T |
4858246 |
tagttgaagtttatttgcttcagtgttcttgtgtaaatac |
4858207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4838464 - 4838342
Alignment:
| Q |
1 |
caatcgaagggtacaccttatagatttctcagcttttatttttagcttcatcattttccggtcatggacacgttatatttgttgtgcacacacattatag |
100 |
Q |
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| T |
4838464 |
caatcgaagggcacaccttatagattgctcggcttttatttttagcttcatcatttcacggtcatggacacattatatttgttgtgcacacacattatag |
4838365 |
T |
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| Q |
101 |
tcgaataatttgaattagtaaca |
123 |
Q |
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| T |
4838364 |
tcgaataatttgaaccagtaaca |
4838342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 5176125 - 5176205
Alignment:
| Q |
92 |
acattatagtcgaataatttgaattagtaacaaatgtataagaataattaattcccttatttttgcaaaaactgcaacatt |
172 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |
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| T |
5176125 |
acattatagtcgaattatttgaattattaacaaatgtataagattaattaatacccttatttgtgcaaaaactgcaacatt |
5176205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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