View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10451_high_17 (Length: 247)

Name: NF10451_high_17
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10451_high_17
NF10451_high_17
[»] chr4 (6 HSPs)
chr4 (16-231)||(28071185-28071406)
chr4 (59-185)||(2035238-2035364)
chr4 (34-186)||(25536838-25536984)
chr4 (52-186)||(25516651-25516779)
chr4 (90-229)||(50063854-50063981)
chr4 (196-224)||(2035382-2035410)
[»] chr6 (6 HSPs)
chr6 (26-229)||(9657-9861)
chr6 (26-229)||(12383-12587)
chr6 (48-150)||(3185837-3185939)
chr6 (145-231)||(30641512-30641597)
chr6 (79-124)||(30641468-30641513)
chr6 (196-229)||(17589-17622)
[»] chr8 (10 HSPs)
chr8 (67-231)||(11676445-11676609)
chr8 (79-231)||(7839836-7839987)
chr8 (48-172)||(13958504-13958628)
chr8 (97-184)||(30735779-30735866)
chr8 (48-127)||(990116-990195)
chr8 (67-142)||(11668232-11668307)
chr8 (90-140)||(29668925-29668975)
chr8 (196-231)||(11668183-11668218)
chr8 (196-229)||(29668857-29668890)
chr8 (196-236)||(990210-990250)
[»] chr3 (14 HSPs)
chr3 (16-160)||(27221570-27221713)
chr3 (16-127)||(37921757-37921867)
chr3 (49-150)||(2545189-2545290)
chr3 (49-150)||(35127000-35127101)
chr3 (48-124)||(9308801-9308877)
chr3 (48-127)||(36430159-36430237)
chr3 (97-172)||(9291948-9292023)
chr3 (16-124)||(46278805-46278918)
chr3 (196-231)||(46278674-46278709)
chr3 (196-229)||(2545117-2545150)
chr3 (196-229)||(27221516-27221549)
chr3 (196-229)||(35127131-35127164)
chr3 (196-229)||(37921915-37921948)
chr3 (196-224)||(36430092-36430120)
[»] chr5 (4 HSPs)
chr5 (26-224)||(2643454-2643636)
chr5 (48-143)||(11016216-11016311)
chr5 (109-156)||(14435405-14435452)
chr5 (79-112)||(14435290-14435323)
[»] chr1 (6 HSPs)
chr1 (101-231)||(35754171-35754300)
chr1 (16-121)||(23552351-23552455)
chr1 (16-74)||(35754296-35754353)
chr1 (196-231)||(32060440-32060475)
chr1 (90-127)||(8082029-8082066)
chr1 (196-224)||(8081986-8082014)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 28071185 - 28071406
Alignment:
Q  16 acggcaagcaagcaggaacaaactgaaatcttaaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  28071185 acggcaagcaagcaggaacaaactgaaatcttaaacctgaacaaatagaatgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagaga 28071284  T
Q  116 agtaagtaattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgc------nnnnnnnnnaatatgagattcga 209  Q
    |||||||||||  |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||               ||||||||||||||    
T  28071285 agtaagtaattcatttgtgcaaaaaagataagattcagattccttcttctcctgttcttgtattcttgtgctttttttttttttttaatatgagattcga 28071384  T
Q  210 ttccttttctcctgttcaaatt 231  Q
    ||||||||||||||||||||||    
T  28071385 ttccttttctcctgttcaaatt 28071406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 2035238 - 2035364
Alignment:
Q  59 aagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaagatttagattcc 158  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  2035238 aagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcc 2035337  T
Q  159 ttcttctcctgttcttgtattcttgtg 185  Q
    |||||||||||||||||||||||||||    
T  2035338 ttcttctcctgttcttgtattcttgtg 2035364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 25536984 - 25536838
Alignment:
Q  34 caaactgaaatcttaaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatc-------gcaagcaggaagagaagtaagtaatt 126  Q
    ||||||||||||  ||| ||||| ||||||| |||||||||||  ||||||||||||||||||||||       ||||||||||||||||||||          
T  25536984 caaactgaaatcgcaaagctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaaatcgcaagcaggaagagaagtaa------ 25536891  T
Q  127 ggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgc 186  Q
           |||||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  25536890 -------gtaaaaaagataagattcagattccttcttctcctgttcttatattcttgtgc 25536838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 25516651 - 25516779
Alignment:
Q  52 ctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaa-------gcaggaagagaagtaagtaattggtttgtgtaaaaaagac 144  Q
    ||||| ||||||| |||||||||||  ||||||||||||||||||||||||||       ||||||||||||||||||||             ||||||     
T  25516651 ctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaaatcgcaagcaggaagagaagtaagtaa-------------aaaagat 25516737  T
Q  145 aagatttagattccttcttctcctgttcttgtattcttgtgc 186  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  25516738 aagattcagattccttcttctcctgttcttatattcttgtgc 25516779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 50063981 - 50063854
Alignment:
Q  90 aatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgt-attcttgtgcnn 188  Q
    |||||||||||||||||||||||||||||||             |||||||||| |||||| ||||||||||||||||||||||||| |||| | |        
T  50063981 aatcgcaaatcgcaagcaggaagagaagtaa-------------gtaaaaaagataagattcagattccttcttctcctgttcttgtgattccttttttt 50063895  T
Q  189 nnnnnnnaatatgagattcgattccttttctcctgttcaaa 229  Q
           ||||||||||||||||||||||||||||||||||    
T  50063894 aaatatgaatatgagattcgattccttttctcctgttcaaa 50063854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 2035382 - 2035410
Alignment:
Q  196 aatatgagattcgattccttttctcctgt 224  Q
    |||||||||||||||||||||||||||||    
T  2035382 aatatgagattcgattccttttctcctgt 2035410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 9657 - 9861
Alignment:
Q  26 agcaggaacaaactgaaa-tcttaaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 124  Q
    |||||| ||||||||||| ||  |||||| |||||||||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  9657 agcagggacaaactgaaaatcgcaaaccttaacaaagagagtgaagcaagaaacggcaacaccagaatcacaaatcgcaagcaggaagagaagtaagtaa 9756  T
Q  125 ttggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgt 224  Q
    ||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  9757 ttgatttgtgtaaaaaagataagattcatattccttcttctcctgttcttgtattcttgtgctttttttttaatatgagattcgattccttttctcctgt 9856  T
Q  225 tcaaa 229  Q
    |||||    
T  9857 tcaaa 9861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 12383 - 12587
Alignment:
Q  26 agcaggaacaaactgaaa-tcttaaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 124  Q
    |||||| ||||||||||| ||  |||||| |||||||||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  12383 agcagggacaaactgaaaatcgcaaaccttaacaaagagagtgaagcaagaaacggcaacaccagaatcacaaatcgcaagcaggaagagaagtaagtaa 12482  T
Q  125 ttggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgt 224  Q
    ||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  12483 ttgatttgtgtaaaaaagataagattcatattccttcttctcctgttcttgtattcttgtgctttttttttaatatgagattcgattccttttctcctgt 12582  T
Q  225 tcaaa 229  Q
    |||||    
T  12583 tcaaa 12587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 3185837 - 3185939
Alignment:
Q  48 aaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaag 147  Q
    ||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  3185837 aaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataag 3185936  T
Q  148 att 150  Q
    |||    
T  3185937 att 3185939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 30641512 - 30641597
Alignment:
Q  145 aagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgttcaaatt 231  Q
    |||||| ||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  30641512 aagattcagattccttcttcgcctgttcttgtattcttgtgctttttttt-aatatgagattcgattccttttctcctgttcaaatt 30641597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 30641468 - 30641513
Alignment:
Q  79 ggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 124  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  30641468 ggcaacaccagaatcggaaatcgcaagcaggaagagaagtaagtaa 30641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 17589 - 17622
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaa 229  Q
    ||||||||||||||||||||||||||||||||||    
T  17589 aatatgagattcgattccttttctcctgttcaaa 17622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 11676609 - 11676445
Alignment:
Q  67 gaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaagatttagattccttcttctc 166  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||||    
T  11676609 gaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattcatttgtgtaaaaaagataagattcagattccttcttctc 11676510  T
Q  167 ctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgttcaaatt 231  Q
    ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  11676509 ctgttcttgtattcttgtgctttttttttaatatgagattcgattccttttctcctgttcaaatt 11676445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 79 - 231
Target Start/End: Original strand, 7839836 - 7839987
Alignment:
Q  79 ggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtat 178  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  7839836 ggcaacaccagagtcgcaaatcgcaagcaggaacagaagtaagtaattggtttgtgtaaaaaagataagattcagattccttcttctcctgttcttgtat 7839935  T
Q  179 tcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgttcaaatt 231  Q
    ||||||||         ||||||||||||| ||||||||||||||||||||||    
T  7839936 tcttgtgc-ttttttttaatatgagattcgtttccttttctcctgttcaaatt 7839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 13958628 - 13958504
Alignment:
Q  48 aaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaag 147  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  13958628 aaacctgaagaaagagaatgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataag 13958529  T
Q  148 atttagattccttcttctcctgttc 172  Q
    ||| ||||||||||||| |||||||    
T  13958528 attcagattccttcttcccctgttc 13958504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 30735779 - 30735866
Alignment:
Q  97 aatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgt 184  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  30735779 aatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattccttcttctcctgttgttgtattcttgt 30735866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 990116 - 990195
Alignment:
Q  48 aaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattg 127  Q
    ||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  990116 aaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattg 990195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 11668307 - 11668232
Alignment:
Q  67 gaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaag 142  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  11668307 gaagcaagaaacggcaacaccagaatcgcaagtcgcaagcaggaagagaagtaagtaattcatttgtgtaaaaaag 11668232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 29668975 - 29668925
Alignment:
Q  90 aatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaa 140  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29668975 aatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaa 29668925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 11668218 - 11668183
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaatt 231  Q
    ||||||||||||||||||||||||||||||||||||    
T  11668218 aatatgagattcgattccttttctcctgttcaaatt 11668183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 29668890 - 29668857
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaa 229  Q
    ||||||||||||||||||||||||||||||||||    
T  29668890 aatatgagattcgattccttttctcctgttcaaa 29668857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 990210 - 990250
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaattgatga 236  Q
    |||||||||||||||| ||||||||||||| ||||| ||||    
T  990210 aatatgagattcgatttcttttctcctgttaaaatttatga 990250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 27221713 - 27221570
Alignment:
Q  16 acggcaagcaagcaggaacaaactgaaatcttaaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagaga 115  Q
    |||||||||| |||||||||||||||||||  ||||||||| ||||||| |||||||||||  ||||||||||||||||||||||| ||| |||||||||    
T  27221713 acggcaagca-gcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagaga 27221615  T
Q  116 agtaagtaattggtttgtgtaaaaaagacaagatttagattcctt 160  Q
    |||||||||||| | ||||||||||||| |||||| |||||||||    
T  27221614 agtaagtaattgatgtgtgtaaaaaagataagattcagattcctt 27221570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 37921757 - 37921867
Alignment:
Q  16 acggcaagcaagcaggaacaaactgaaatcttaaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagaga 115  Q
    |||||||||| |||||||||||||||||||  |||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  37921757 acggcaagca-gcaggaacaaactgaaatcgcaaacctgaacgaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagaga 37921855  T
Q  116 agtaagtaattg 127  Q
    ||||||||||||    
T  37921856 agtaagtaattg 37921867  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 2545290 - 2545189
Alignment:
Q  49 aacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaaga 148  Q
    |||||||||||||||| |||||||||||  |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  2545290 aacctgaacaaagagagtgaagcaagaaacggcaacacaagaatcgcaaatctcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataaga 2545191  T
Q  149 tt 150  Q
    ||    
T  2545190 tt 2545189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 35127000 - 35127101
Alignment:
Q  49 aacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaaga 148  Q
    |||||||| ||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  35127000 aacctgaagaaagagagtgaagcaagaaacggcaacaccagaatggcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataaga 35127099  T
Q  149 tt 150  Q
    ||    
T  35127100 tt 35127101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 9308801 - 9308877
Alignment:
Q  48 aaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaa 124  Q
    ||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  9308801 aaacctgaagaaagagaatgaagcaagaaacggcaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 9308877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 36430237 - 36430159
Alignment:
Q  48 aaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattg 127  Q
    |||||||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36430237 aaacctgaacaa-gagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattg 36430159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 9292023 - 9291948
Alignment:
Q  97 aatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttc 172  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||| |||||||||||||||    
T  9292023 aatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagattagattcagatttcttcttctcctgttc 9291948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 46278918 - 46278805
Alignment:
Q  16 acggcaagcaagcaggaacaaactgaaatcttaaacctgaacaaagagaatgaa------gcaagaactggcaacaccagaatcgcaaatcgcaagcagg 109  Q
    |||||||||| |||||| ||||||||||||  ||||||||||||||||||||||      |||||||  |||||||||| |||||||||||||||||| |    
T  46278918 acggcaagca-gcaggaccaaactgaaatcgcaaacctgaacaaagagaatgaacaagaagcaagaaacggcaacaccaaaatcgcaaatcgcaagcatg 46278820  T
Q  110 aagagaagtaagtaa 124  Q
    |||||||||||||||    
T  46278819 aagagaagtaagtaa 46278805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 46278709 - 46278674
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaatt 231  Q
    ||||||||||||||||||||||||||||||||||||    
T  46278709 aatatgagattcgattccttttctcctgttcaaatt 46278674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 2545150 - 2545117
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaa 229  Q
    ||||||||||||||||||||||||||||||||||    
T  2545150 aatatgagattcgattccttttctcctgttcaaa 2545117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 27221549 - 27221516
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaa 229  Q
    ||||||||||||||||||||||||||||||||||    
T  27221549 aatatgagattcgattccttttctcctgttcaaa 27221516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 35127131 - 35127164
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaa 229  Q
    ||||||||||||||||||||||||||||||||||    
T  35127131 aatatgagattcgattccttttctcctgttcaaa 35127164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 37921915 - 37921948
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaa 229  Q
    ||||||||||||||||||||||||||||||||||    
T  37921915 aatatgagattcgattccttttctcctgttcaaa 37921948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 36430120 - 36430092
Alignment:
Q  196 aatatgagattcgattccttttctcctgt 224  Q
    |||||||||||||||||||||||||||||    
T  36430120 aatatgagattcgattccttttctcctgt 36430092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 2643454 - 2643636
Alignment:
Q  26 agcaggaacaaactgaaatcttaaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaat 125  Q
    ||||||||||||||||||||  ||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||         
T  2643454 agcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaa----- 2643548  T
Q  126 tggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgt 224  Q
            |||||||||| |||||| ||||||||||| |||||||||||||||||||||||         ||||||||||||||||| |||||||||||    
T  2643549 --------gtaaaaaagataagattcagattccttctcctcctgttcttgtattcttgtgc---ttttttaatatgagattcgattcgttttctcctgt 2643636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 11016311 - 11016216
Alignment:
Q  48 aaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattggtttgtgtaaaaaaga 143  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11016311 aaacctgaacaaagagaatgaagcaagaaacagcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaaga 11016216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 14435405 - 14435452
Alignment:
Q  109 gaagagaagtaagtaattggtttgtgtaaaaaagacaagatttagatt 156  Q
    ||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  14435405 gaagagaagtaagtaattgatttgtgtaaaaaagataagattgagatt 14435452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 14435290 - 14435323
Alignment:
Q  79 ggcaacaccagaatcgcaaatcgcaagcaggaag 112  Q
    ||||||||||||||||||||||| ||||||||||    
T  14435290 ggcaacaccagaatcgcaaatcggaagcaggaag 14435323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 35754300 - 35754171
Alignment:
Q  101 gcaagcaggaagagaagtaagtaattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatat 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||         |||||    
T  35754300 gcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattccttcttctcctgttcttatattcttgtgc-ttttttttaatat 35754202  T
Q  201 gagattcgattccttttctcctgttcaaatt 231  Q
    ||||||||||||||||||| |||||||||||    
T  35754201 gagattcgattccttttcttctgttcaaatt 35754171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 23552351 - 23552455
Alignment:
Q  16 acggcaagcaagcaggaacaaactgaaatcttaaacctgaacaaagagaatgaagcaagaactggcaacaccagaatcgcaaatcgcaagcaggaagaga 115  Q
    |||||||||| |||||||||||||| ||||  ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  23552351 acggcaagca-gcaggaacaaactgtaatcgcaaacctgaacaaagagagtgaagcaagaaagggcaacaccagaatcgcaaatcgcaagcaggaagaga 23552449  T
Q  116 agtaag 121  Q
    ||||||    
T  23552450 agtaag 23552455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 35754353 - 35754296
Alignment:
Q  16 acggcaagcaagcaggaacaaactgaaatcttaaacctgaacaaagagaatgaagcaag 74  Q
    |||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  35754353 acggcaagca-gcaggaacaaactgaaatcgcaaacctgaacaaagagaatgaagcaag 35754296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 32060440 - 32060475
Alignment:
Q  196 aatatgagattcgattccttttctcctgttcaaatt 231  Q
    ||||||||||||||||||||||||||||||||||||    
T  32060440 aatatgagattcgattccttttctcctgttcaaatt 32060475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 8082066 - 8082029
Alignment:
Q  90 aatcgcaaatcgcaagcaggaagagaagtaagtaattg 127  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8082066 aatcgcaaatcgcaagcaggaagagaagtaagaaattg 8082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 8082014 - 8081986
Alignment:
Q  196 aatatgagattcgattccttttctcctgt 224  Q
    |||||||||||||||||||||||||||||    
T  8082014 aatatgagattcgattccttttctcctgt 8081986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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