View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10451_high_3 (Length: 578)

Name: NF10451_high_3
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10451_high_3
NF10451_high_3
[»] chr6 (4 HSPs)
chr6 (173-562)||(13356009-13356396)
chr6 (1-149)||(13355807-13355955)
chr6 (176-227)||(15294657-15294708)
chr6 (176-227)||(15295395-15295446)
[»] chr7 (2 HSPs)
chr7 (265-545)||(19085683-19085944)
chr7 (182-227)||(48625061-48625106)
[»] chr3 (1 HSPs)
chr3 (173-227)||(35650822-35650876)
[»] chr8 (3 HSPs)
chr8 (178-224)||(22810452-22810498)
chr8 (180-227)||(14734572-14734619)
chr8 (182-227)||(34347800-34347845)
[»] chr5 (1 HSPs)
chr5 (182-227)||(31658206-31658251)
[»] chr2 (4 HSPs)
chr2 (182-227)||(23175271-23175316)
chr2 (182-227)||(23386988-23387033)
chr2 (182-227)||(23586528-23586573)
chr2 (182-227)||(30874694-30874739)
[»] chr4 (1 HSPs)
chr4 (180-216)||(12068199-12068235)


Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 173 - 562
Target Start/End: Original strand, 13356009 - 13356396
Alignment:
Q  173 ttcaaaatcattcttatcattctcacataagatgttcattctcacttgatatgccattctttagttttaaaatgtaagtatcgtaacatctcaattttga 272  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||    
T  13356009 ttcaaaatcattcctatcattctcaaataagatgttcattctcacttgatatgtcattctttaatttttaaatgtaagtatcataacatctcaattttga 13356108  T
Q  273 tttaccataaagttgatcttcaccctgagaaaagacacgtttaacttcgtttttctcttggacctcttcttcattgttatcatcattatcactacgtatc 372  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13356109 tttaccataaagttggtcttcaccctgagaaaagacacgtttaacttcgtttttctcttggacctcttcttcattgttatcatcattatcactacatatc 13356208  T
Q  373 attgtctcacctccatgttgatcatagtatatgtttcaccttgcagaaagtgcatcaactttggccattctcttatttctgttatatatgaaatatttta 472  Q
    ||| ||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13356209 attatc--acctccatgttgatcatagtatatgtttcatcttgcagaaagtgcatcaactttggccattctcttatttctgttatatatgaaatatttta 13356306  T
Q  473 ataaagcaataaatacataataaaaatgacacgtgcattgttcaatatattttgcatgaaatatatacatgaagtgggaatacaaaaata 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13356307 ataaagcaataaatacataataaaaatgacacgtgcattgttcaatatattttgcatgaaatatatacatgaagtgggaatacaaaaata 13356396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 13355807 - 13355955
Alignment:
Q  1 tgtaatccaaaatatgggttgtctttgacaatgttaccactagtcagcatcacaggtggagtggatatactttgatggctgaaaagaatttcattttctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13355807 tgtaatccaaaatatgggttgtctttgacaatgttaccactggttagcatcacaggtggagtggatatactttgatggctgaaaagaatttcattttctg 13355906  T
Q  101 ggtagaaagatttcctttgtagctatgcagaagaagaaaagaggtgcgc 149  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  13355907 ggtagaaggatttcctttgtagctatgcggaagaagaaaagaggtgcgc 13355955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 15294708 - 15294657
Alignment:
Q  176 aaaatcattcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||| |||||| ||||||||||||||||||| |||||||||  |||||||||    
T  15294708 aaaaacattctcatcattctcacataagatggtcattctcatgtgatatgcc 15294657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 15295395 - 15295446
Alignment:
Q  176 aaaatcattcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||| |||||| ||||||||||||||||||| |||||||||  |||||||||    
T  15295395 aaaaacattctcatcattctcacataagatggtcattctcatgtgatatgcc 15295446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 265 - 545
Target Start/End: Complemental strand, 19085944 - 19085683
Alignment:
Q  265 aattttgatttaccata-aagttgatcttcaccctgagaaaagacacgtttaacttcgtttttctcttggacctcttcttcattgttatcatcattatca 363  Q
    ||||||||||||||||| ||||| ||||||||| | ||||||| ||||||||||||| || |||||||||||||||||            |||  |||||    
T  19085944 aattttgatttaccatagaagtttatcttcaccataagaaaagtcacgtttaacttctttgttctcttggacctcttc------------atcggtatca 19085857  T
Q  364 ctacgtatcattgtctcacctccatgttgatcatagtatatgtttcaccttgcagaaagtgcatcaactttggccattctcttatttctgttatatatga 463  Q
    || | ||||||||| |||||| |||||||||| || ||||||||||  ||||||||||  |||||| |||| | |||||||| ||||||||| | | |||    
T  19085856 ctgcatatcattgtttcacctgcatgttgatcgtaatatatgtttcgtcttgcagaaaaggcatcagctttcgtcattctctcatttctgttttgtgtga 19085757  T
Q  464 aatattttaataaagcaataaatacataataaaaatgacacgtgcattgttcaatatattttgcatgaaatatatacatgaa 545  Q
    || ||||||||||||||| | |        ||||||||||| ||||||| ||||||||||| |||| |||| ||||| ||||    
T  19085756 aagattttaataaagcaacaca--------aaaaatgacacatgcattgatcaatatatttagcattaaatgtatacttgaa 19085683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 48625106 - 48625061
Alignment:
Q  182 attcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  48625106 attcctatcattctcacataacatatccattctcacttgatatgcc 48625061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 35650876 - 35650822
Alignment:
Q  173 ttcaaaatcattcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  35650876 ttcaaaatcattcctatcattctcacataagatgtccattctcacttgatatgcc 35650822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 22810452 - 22810498
Alignment:
Q  178 aatcattcttatcattctcacataagatgttcattctcacttgatat 224  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||||    
T  22810452 aatcattcctatcattctcacataagatattcattctcatttgatat 22810498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 14734572 - 14734619
Alignment:
Q  180 tcattcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||||| |||| |||||| ||||||||| |||||||||||||||||||    
T  14734572 tcattcctatctttctcatataagatgtacattctcacttgatatgcc 14734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 34347845 - 34347800
Alignment:
Q  182 attcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  34347845 attcatatcattctcacataacatatccattctcacttgatatgcc 34347800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 31658251 - 31658206
Alignment:
Q  182 attcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    ||||||||||||||||||||| || | |||||||||||||||||||    
T  31658251 attcttatcattctcacataacatatccattctcacttgatatgcc 31658206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 23175271 - 23175316
Alignment:
Q  182 attcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  23175271 attcctatcattctcacataacatatccattctcacttgatatgcc 23175316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 23387033 - 23386988
Alignment:
Q  182 attcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  23387033 attcctatcattctcacataacatatccattctcacttgatatgcc 23386988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 23586528 - 23586573
Alignment:
Q  182 attcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  23586528 attcctatcattctcacataacatatccattctcacttgatatgcc 23586573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 30874739 - 30874694
Alignment:
Q  182 attcttatcattctcacataagatgttcattctcacttgatatgcc 227  Q
    |||||||||||||||||||||  | | |||||||||||||||||||    
T  30874739 attcttatcattctcacataacttatccattctcacttgatatgcc 30874694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 12068235 - 12068199
Alignment:
Q  180 tcattcttatcattctcacataagatgttcattctca 216  Q
    |||||||||||||||||| |||||| |||||||||||    
T  12068235 tcattcttatcattctcatataagaagttcattctca 12068199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University