View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10451_high_6 (Length: 375)
Name: NF10451_high_6
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10451_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 13018123 - 13018480
Alignment:
| Q |
1 |
tcacctaaaagggttccaaaagtgggcgcaaattaaggaaaattcctcaatattcctcaaaagtgaaagaaacggcctttggtccagccataaagattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13018123 |
tcacctaaaagggttccaaaagtgggcgcaaattaaggaaaattcctcaatattcctcaaaagtgaaagaaacggcctttggtccagccataaagattaa |
13018222 |
T |
|
| Q |
101 |
aattatgactgtgttcaatgggaactttccatagcttaaaaagttaaatgtcaaattcttaatatatatctcactttttctttgtttcacgcagatgttg |
200 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13018223 |
aattatgactgtattcaatgggaattttccatagcttaaaaagttaaatgtcaaattcttaatatatatctcactgtttctttgtttcacgcagatgttg |
13018322 |
T |
|
| Q |
201 |
cttccatattttgctacatatatattttctcaatctttcataaatttctgattcagatagggggtgtatttcaccagtagtactgctagtaaatatagat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13018323 |
cttccatattttgctacatatatattttctcaatctttcataaatttctgattcagatagggggtgtatttcaccggtagtactgctagtaaatatagat |
13018422 |
T |
|
| Q |
301 |
tttataactaaaggattcattgaatcaaatatggattttataactaagtgattgagtt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13018423 |
tttataactaaaggattcattgaatcaaatatggattttataactaagtgattgagtt |
13018480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 170 - 358
Target Start/End: Original strand, 13090143 - 13090331
Alignment:
| Q |
170 |
ctcactttttctttgtttcacgcagatgttgcttccatattttgctacatatatattttctcaatctttcataaatttctgattcagatagggggtgtat |
269 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13090143 |
ctcactttttctttgttccacgcagatgttgcttccatattttactacatatatattttctcaatctttcataaatttctgattcagatagggtgtgtat |
13090242 |
T |
|
| Q |
270 |
ttcaccagtagtactgctagtaaatatagattttataactaaaggattcattgaatcaaatatggattttataactaagtgattgagtt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13090243 |
ttcaccagtagtactgctagtaaatatagattttataactaaaggattcattgaatcaaatatggattttataactaaatgattgagtt |
13090331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 13089508 - 13089670
Alignment:
| Q |
1 |
tcacctaaaagggttccaaaagtgggcgcaaattaaggaaaattcctcaatattcctcaaaagtgaaagaaacggcctttggtccagccataaagattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13089508 |
tcacctaaaagggttccaaaagtgggcgcaaattaaggaaaattcctcaatattcctcaaaagtgaaagaaacggcctttggtccagccataaagattaa |
13089607 |
T |
|
| Q |
101 |
aattatgactgtgttcaatgggaactttccatagcttaaaaagttaaatgtcaaattcttaat |
163 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13089608 |
aattatgactgtattcaatgggaactttccatagcttaaaaagttaaatgtcaaattcttaat |
13089670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University