View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10451_high_8 (Length: 360)

Name: NF10451_high_8
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10451_high_8
NF10451_high_8
[»] chr4 (3 HSPs)
chr4 (1-337)||(42198329-42198671)
chr4 (26-96)||(7030893-7030963)
chr4 (27-75)||(51002279-51002327)
[»] chr3 (2 HSPs)
chr3 (29-74)||(29817984-29818029)
chr3 (45-78)||(49088762-49088795)
[»] chr5 (1 HSPs)
chr5 (27-78)||(24498576-24498627)
[»] chr2 (2 HSPs)
chr2 (28-75)||(42475131-42475178)
chr2 (46-78)||(41672302-41672334)
[»] chr7 (2 HSPs)
chr7 (28-78)||(24839481-24839531)
chr7 (29-74)||(36341087-36341132)
[»] chr6 (1 HSPs)
chr6 (28-74)||(2445292-2445338)
[»] chr1 (4 HSPs)
chr1 (28-74)||(41032924-41032970)
chr1 (28-76)||(1454514-1454562)
chr1 (38-74)||(7550899-7550935)
chr1 (23-75)||(24506934-24506986)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 42198671 - 42198329
Alignment:
Q  1 taacatatgctcaaaggcacaagtctctgtcctcttaagctcaactcagttgatataaacaatgcataaaatatgtaacttccagattcgaacctcaacc 100  Q
    |||||||||||||||||||||||||||||||||||| | || | |||||||| |||||||||||||||||||||| ||||||||||||| ||| ||| ||    
T  42198671 taacatatgctcaaaggcacaagtctctgtcctcttgaacttagctcagttggtataaacaatgcataaaatatgcaacttccagattcaaacatcagcc 42198572  T
Q  101 atcacaacnnnnnnnngg--------cacaagtccctaatcttttgaatcggtctattgttcgtaagaattgccttaactagtttatgctattaagaagt 192  Q
    | |||||                   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42198571 accacaaaaaaaaaaaaaaaaaaaaacacaagtccctaatcttttgaa-cggtctattgttcgtaagaattgccttaactagtttatgctattaagaagt 42198473  T
Q  193 tagggatcgacatctaattaactactatcttaagtatataaaaaataagtgaattgattagtagttacttcaaaaaacatgtcaattgccgtaactagtt 292  Q
    ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42198472 tagggatcgacatctaattaactactatcttaagtatgt-aaaagtaagtgaattgattagtagttacttcagaaaacatgtcaattgccgtaactagtt 42198374  T
Q  293 ttcttttttcaccnnnnnnnnncatgtcaattgattacttcctac 337  Q
    |||||||||||||         |||||||||||||||||||||||    
T  42198373 ttcttttttcaccaacaaaaaacatgtcaattgattacttcctac 42198329  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 7030963 - 7030893
Alignment:
Q  26 tctgtcctcttaagctcaactcagttgatataaacaatgcataaaatatgtaacttccagattcgaacctc 96  Q
    ||||||||| | |||| |||||||||| |||| ||||||||||||||||| ||  ||| ||||||||||||    
T  7030963 tctgtcctcgtgagcttaactcagttggtatagacaatgcataaaatatgcaaggtccggattcgaacctc 7030893  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 51002279 - 51002327
Alignment:
Q  27 ctgtcctcttaagctcaactcagttgatataaacaatgcataaaatatg 75  Q
    |||||||| | |||| |||||||||| |||| |||||||||||||||||    
T  51002279 ctgtcctcgtgagcttaactcagttggtatagacaatgcataaaatatg 51002327  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 29818029 - 29817984
Alignment:
Q  29 gtcctcttaagctcaactcagttgatataaacaatgcataaaatat 74  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||    
T  29818029 gtcctcataagctcgactcagttgatatgaacaatgcataaaatat 29817984  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 49088762 - 49088795
Alignment:
Q  45 ctcagttgatataaacaatgcataaaatatgtaa 78  Q
    ||||||||||||||||||||||||||||||||||    
T  49088762 ctcagttgatataaacaatgcataaaatatgtaa 49088795  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 24498576 - 24498627
Alignment:
Q  27 ctgtcctcttaagctcaactcagttgatataaacaatgcataaaatatgtaa 78  Q
    |||||||| | |||| |||||||||||||| || ||||||||||||||||||    
T  24498576 ctgtcctcgtgagcttaactcagttgatatgaataatgcataaaatatgtaa 24498627  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 42475178 - 42475131
Alignment:
Q  28 tgtcctcttaagctcaactcagttgatataaacaatgcataaaatatg 75  Q
    ||||||| | |||| |||||||||| ||||||||||||||||||||||    
T  42475178 tgtcctcgtgagcttaactcagttggtataaacaatgcataaaatatg 42475131  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 41672334 - 41672302
Alignment:
Q  46 tcagttgatataaacaatgcataaaatatgtaa 78  Q
    ||||||| |||||||||||||||||||||||||    
T  41672334 tcagttggtataaacaatgcataaaatatgtaa 41672302  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 24839481 - 24839531
Alignment:
Q  28 tgtcctcttaagctcaactcagttgatataaacaatgcataaaatatgtaa 78  Q
    ||||||| | |||| |||||||||| |||| ||||||||||||||||||||    
T  24839481 tgtcctcgtgagcttaactcagttggtatagacaatgcataaaatatgtaa 24839531  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 36341132 - 36341087
Alignment:
Q  29 gtcctcttaagctcaactcagttgatataaacaatgcataaaatat 74  Q
    |||||||| |||| |||||||||| ||| |||||||||||||||||    
T  36341132 gtcctcttgagcttaactcagttggtatgaacaatgcataaaatat 36341087  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 2445292 - 2445338
Alignment:
Q  28 tgtcctcttaagctcaactcagttgatataaacaatgcataaaatat 74  Q
    ||||||| |||||| |||||||||||||| |||||||||||| ||||    
T  2445292 tgtcctcgtaagcttaactcagttgatatgaacaatgcataatatat 2445338  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 41032924 - 41032970
Alignment:
Q  28 tgtcctcttaagctcaactcagttgatataaacaatgcataaaatat 74  Q
    ||||||| | |||| |||||||||||||| |||||||||||||||||    
T  41032924 tgtcctcgtgagcttaactcagttgatatgaacaatgcataaaatat 41032970  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 1454514 - 1454562
Alignment:
Q  28 tgtcctcttaagctcaactcagttgatataaacaatgcataaaatatgt 76  Q
    ||||||| |||| | ||||||||||||||  ||||||||||||||||||    
T  1454514 tgtcctcgtaagtttaactcagttgatatggacaatgcataaaatatgt 1454562  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 7550899 - 7550935
Alignment:
Q  38 agctcaactcagttgatataaacaatgcataaaatat 74  Q
    |||| |||||||||||||| |||||||||||||||||    
T  7550899 agcttaactcagttgatatgaacaatgcataaaatat 7550935  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 24506986 - 24506934
Alignment:
Q  23 gtctctgtcctcttaagctcaactcagttgatataaacaatgcataaaatatg 75  Q
    |||||| ||||| |||||| | ||||||||||||| |||||| ||||||||||    
T  24506986 gtctctatcctcgtaagcttagctcagttgatatagacaatgtataaaatatg 24506934  T

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