View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10451_low_11 (Length: 358)
Name: NF10451_low_11
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10451_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 3014744 - 3014402
Alignment:
| Q |
1 |
ctaggtcgaagactctgcaataacaagatatgttatgagatctgtgacaaagaaacattgaactataataataactagtggaaaaaaggctaacctgcac |
100 |
Q |
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| T |
3014744 |
ctaggtcgaagactctgcaataacaagatatgttatgagatctgcgacgaagaaacattgaactataataataactagttgaaaaaaggctaacctgcac |
3014645 |
T |
|
| Q |
101 |
atattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaa |
200 |
Q |
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| T |
3014644 |
atattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccgctgaaatatgaa |
3014545 |
T |
|
| Q |
201 |
atacaaaaacatgaatagaaagaattaagcagatattacgcaacaacatcgctataatacatacaaatcaacataccttgtagcacttgtgggcacaatg |
300 |
Q |
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| T |
3014544 |
atacaaaaacatgaatagaaagaattaagcagatattacgcgacaacaacgctgtaaaacatacaaatcaacataccttatagcacttgtgggcacaatg |
3014445 |
T |
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| Q |
301 |
ctgaatgtttgtcctccgattgtttcgtttttataatacaagt |
343 |
Q |
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| T |
3014444 |
ctgaatgtttgtcctccgattgtttcgtttttataatacaagt |
3014402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 183119 - 183042
Alignment:
| Q |
138 |
ttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaa |
215 |
Q |
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| T |
183119 |
ttttgggtccactgaaacaatagaaataacatgtctgggattccttcaccattgaaatatcaaatactaaaacatgaa |
183042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 591250 - 591338
Alignment:
| Q |
129 |
atcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
217 |
Q |
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|||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||| |||| |
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| T |
591250 |
atcatggtcttttgggtccaaccaaacaatagaaataacatgtccgtgattccttcaccactgaaatatcaaatactagaacatcaata |
591338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 40672025 - 40672172
Alignment:
| Q |
56 |
cattgaactataataataactagtggaaaaaaggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaac |
155 |
Q |
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| T |
40672025 |
cattgaataataataataagtggggaaaaaagggctaacctgcacagcttgttgactgtaggtaaacttgtgaataatggtgtattggatccacttaaac |
40672124 |
T |
|
| Q |
156 |
aatagaaataacatgtccgggattccttcaccactgaaatatgaaata |
203 |
Q |
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| T |
40672125 |
aatagaaataacatatccgggattccttcaccactgaaatatgaaata |
40672172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 40672231 - 40672265
Alignment:
| Q |
283 |
gcacttgtgggcacaatgctgaatgtttgtcctcc |
317 |
Q |
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| T |
40672231 |
gcacttgtgggcacaatgctgaatgtttgtcctcc |
40672265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 44606488 - 44606401
Alignment:
| Q |
130 |
tcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
217 |
Q |
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| T |
44606488 |
tcatggtcttttgggtccacttaactaatagtaataacatatccgggattccttcaccactgaaatattaaatactaaaacatcaata |
44606401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 44627979 - 44627892
Alignment:
| Q |
130 |
tcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
217 |
Q |
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||||||| ||||| ||||||| || ||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||| |
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| T |
44627979 |
tcatggtcttttgggtccactgaactaatagtaataacatatccgggattccttcaccactgaaatattaaatactaaaacatcaata |
44627892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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