View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10451_low_13 (Length: 304)

Name: NF10451_low_13
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10451_low_13
NF10451_low_13
[»] chr6 (1 HSPs)
chr6 (1-299)||(19794230-19794528)
[»] chr8 (1 HSPs)
chr8 (21-141)||(35506384-35506508)
[»] chr1 (1 HSPs)
chr1 (1-141)||(46652215-46652359)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-141)||(9880-10024)
[»] chr7 (3 HSPs)
chr7 (1-141)||(28849035-28849179)
chr7 (21-100)||(43546184-43546263)
chr7 (1-141)||(25008564-25008708)
[»] chr4 (2 HSPs)
chr4 (1-141)||(39928788-39928932)
chr4 (68-113)||(48206532-48206577)
[»] scaffold0524 (1 HSPs)
scaffold0524 (28-141)||(8159-8276)
[»] chr5 (2 HSPs)
chr5 (1-141)||(42775901-42776045)
chr5 (68-113)||(26911515-26911560)
[»] chr3 (2 HSPs)
chr3 (1-141)||(8391872-8392016)
chr3 (1-141)||(45981888-45982032)
[»] chr2 (2 HSPs)
chr2 (1-100)||(20587565-20587664)
chr2 (68-113)||(42246962-42247007)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-138)||(194075-194216)
[»] scaffold0178 (1 HSPs)
scaffold0178 (68-113)||(1965-2010)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 19794230 - 19794528
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttggatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  19794230 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgagtacccttttggatgaattgaaatgggtttgtgttggatttt 19794329  T
Q  101 gagttgcaggaacaaaagggtgtgtgtggatctgtcttgttggatggttcagcttcagaatgtgtgtaaatcgcatgcttgtttgaaggagaaagttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19794330 gagttgcaggaacaaaagggtgtgtgtggatctgtcttgttggatggttcagcttcagaatgtgtgtaaatcgcatgcttgtttgaaggagaaagttcat 19794429  T
Q  201 cttaggggactctttcatcgtcttagagctcttattgcccttaattgtaccgttgttttcgtttcaggtttggtacattgcttttttccctttgcttct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  19794430 cttaggggactctttcatcgtcttagagctcttattgcccttaattgtactgttgttttcgtttcaggtttggtacattgcttttttctctttgattct 19794528  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 35506384 - 35506508
Alignment:
Q  21 atttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttttga---gttgcaggaacaaa 116  Q
    ||||||||||||||||||| ||||||  |||||||||| |||||||||||||||||| ||| | || ||||||||| ||||||   |||||| |||||||    
T  35506384 atttctcctccaaaatttgctttttcttgttgaatcgagtacccttttggatgaattaaaacgtgtatgtgttggatttttgagttgttgcatgaacaaa 35506483  T
Q  117 agggtgtgtgtggatctgtcttgtt 141  Q
    ||||||  | |||||||||||||||    
T  35506484 agggtgcttttggatctgtcttgtt 35506508  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 46652215 - 46652359
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttt 99  Q
    ||||||||||   ||||||  |||||||||||||||||| ||||||  |||||||||| |||||||||||||||||| ||| | || ||||||||| |||    
T  46652215 ctcacaatttctcctttcaagtttctcctccaaaatttgctttttcttgttgaatcgagtacccttttggatgaattaaaacgtgtatgtgttggatttt 46652314  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtcttgtt 141  Q
    |||   |||||| |||||||||||||  | |||||||||||||||    
T  46652315 tgagttgttgcatgaacaaaagggtgcttttggatctgtcttgtt 46652359  T

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Target: scaffold0472 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 9880 - 10024
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttt 99  Q
    ||||||||||   ||||||  |||||||||||||||||| ||||||  |||||||||| |||||||||||||||||| ||| | || ||||||||| |||    
T  9880 ctcacaatttctcctttcaagtttctcctccaaaatttgctttttcttgttgaatcgagtacccttttggatgaattaaaacgtgtatgtgttggatttt 9979  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtcttgtt 141  Q
    |||   |||||| ||||||||||||   | |||||||||||||||    
T  9980 tgagttgttgcatgaacaaaagggtacttttggatctgtcttgtt 10024  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 28849179 - 28849035
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttt 99  Q
    ||||||||||   ||||||  |||||||||||||||||| ||||||  || ||||||| |||||||||||||||||| ||| | || ||||||||| |||    
T  28849179 ctcacaatttctcctttcaagtttctcctccaaaatttggtttttcttgtggaatcgactacccttttggatgaattaaaacgtgtatgtgttggatttt 28849080  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtcttgtt 141  Q
    |||   |||||| |||||||||||||  | |||||||||||||||    
T  28849079 tgagttgttgcatgaacaaaagggtgcttttggatctgtcttgtt 28849035  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 43546184 - 43546263
Alignment:
Q  21 atttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttggatttt 100  Q
    ||||||||||||||||||| ||||||  |||||||||| |||||||||||||||||| ||| | || |||||||||||||    
T  43546184 atttctcctccaaaatttgctttttcttgttgaatcgagtacccttttggatgaattaaaacgtgtatgtgttggatttt 43546263  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 25008708 - 25008564
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttt 99  Q
    ||||||||||   ||||||  |||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| ||| | || ||||||| | |||    
T  25008708 ctcacaatttctcctttcaagtttctcctccaaaatttgctttttcttgttgaatcgagtacccttttcgatgaattaaaacgtgtatgtgttgaatttt 25008609  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtcttgtt 141  Q
    |||   |||||| |||||||||||||  | |||||||||||||||    
T  25008608 tgagttgttgcatgaacaaaagggtgcttttggatctgtcttgtt 25008564  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 39928788 - 39928932
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttt 99  Q
    ||||||||||   ||||||  |||||||||||||||||| ||||||  |||||||||| |||||||||||||||||| |||   || ||||||||| |||    
T  39928788 ctcacaatttctcctttcaagtttctcctccaaaatttgctttttcttgttgaatcgagtacccttttggatgaattaaaacatgtatgtgttggatttt 39928887  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtcttgtt 141  Q
    |||   |||||| |||||||||||||  | |||||||||||||||    
T  39928888 tgagttgttgcatgaacaaaagggtgcttttggatctgtcttgtt 39928932  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 48206577 - 48206532
Alignment:
Q  68 tggatgaattgaaatgggtctgtgttggattttgagttgcaggaac 113  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  48206577 tggatgaattaaaatgggtatgtgttgaattttgagttgcaggaac 48206532  T

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Target: scaffold0524 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 8276 - 8159
Alignment:
Q  28 ctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttttga---gttgcaggaacaaaagggtgt 123  Q
    |||||||||||| ||||||  |||||||||| |||||||||||||||||| ||| | || ||||||||| ||||||   |||||| |||||||||||||     
T  8276 ctccaaaatttgctttttcttgttgaatcgagtacccttttggatgaattaaaacgtgtatgtgttggatttttgagttgttgcatgaacaaaagggtgc 8177  T
Q  124 gtgtggatctgtcttgtt 141  Q
     | |||||||||||||||    
T  8176 ttttggatctgtcttgtt 8159  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 42776045 - 42775901
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttt 99  Q
    ||||||||||   ||||||  |||||||||||||||||| ||||||  |||||||||| |||||||||||||||||| ||| | || ||| ||||| |||    
T  42776045 ctcacaatttctcctttcaagtttctcctccaaaatttgttttttcttgttgaatcgagtacccttttggatgaattaaaacgtgtatgttttggatttt 42775946  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtcttgtt 141  Q
    |||   |||||| |||||||||||||  | ||||||| |||||||    
T  42775945 tgagttgttgcatgaacaaaagggtgcttttggatctatcttgtt 42775901  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 26911560 - 26911515
Alignment:
Q  68 tggatgaattgaaatgggtctgtgttggattttgagttgcaggaac 113  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||    
T  26911560 tggatgaattaaaatgggtatgtgttggattttgagctgcaggaac 26911515  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 8392016 - 8391872
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttggatt-t 99  Q
    ||||||||||   ||||||  |||||| ||||||||||| ||||||  |||||||||| |||||||||||||||||| |||   || ||||||||||| |    
T  8392016 ctcacaatttctcctttcaagtttctcttccaaaatttgctttttcttgttgaatcgagtacccttttggatgaattaaaacatgtatgtgttggattat 8391917  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtcttgtt 141  Q
    |||   |||||| |||||||||||||  | |||||||||||||||    
T  8391916 tgagttgttgcatgaacaaaagggtgcttttggatctgtcttgtt 8391872  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 45982032 - 45981888
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttgga-ttt 99  Q
    ||||||||||   ||||||  |||||| ||||||||||| ||||||  |||||||||| |||||||||||||||||| ||| | || ||| ||||| |||    
T  45982032 ctcacaatttctcctttcaagtttctcttccaaaatttgttttttcttgttgaatcgagtacccttttggatgaattaaaacgtgtatgttttggatttt 45981933  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtcttgtt 141  Q
    |||   |||||| |||||||||||||  | |||||| ||||||||    
T  45981932 tgagttgttgcatgaacaaaagggtgcttttggatcagtcttgtt 45981888  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20587664 - 20587565
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttggatttt 100  Q
    ||||||||||   ||||||  ||||||||||||||||||  |||||  |||||||||| |||||||||||||||||| ||| | || |||||||||||||    
T  20587664 ctcacaatttctcctttcaagtttctcctccaaaatttgccttttcttgttgaatcgagtacccttttggatgaattaaaacgtgtatgtgttggatttt 20587565  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 42247007 - 42246962
Alignment:
Q  68 tggatgaattgaaatgggtctgtgttggattttgagttgcaggaac 113  Q
    |||||| ||| |||||||| ||||||| ||||||||||||||||||    
T  42247007 tggatggattaaaatgggtatgtgttgaattttgagttgcaggaac 42246962  T

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Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 194216 - 194075
Alignment:
Q  1 ctcacaattttcactttcatatttctcctccaaaatttgatttttcaagttgaatcgaatacccttttggatgaattgaaatgggtctgtgttggattt- 99  Q
    ||||||||||   ||||||  |||||||||||||||||| |||| |  |||||||||| |||||||||||||||||| ||| | || |||||||| |||     
T  194216 ctcacaatttctcctttcaagtttctcctccaaaatttgcttttccttgttgaatcgagtacccttttggatgaattaaaacgtgtatgtgttggtttta 194117  T
Q  100 tga---gttgcaggaacaaaagggtgtgtgtggatctgtctt 138  Q
    |||   |||||| ||||||||||| |  | ||||||||||||    
T  194116 tgagttgttgcatgaacaaaagggagcttttggatctgtctt 194075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 1965 - 2010
Alignment:
Q  68 tggatgaattgaaatgggtctgtgttggattttgagttgcaggaac 113  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||    
T  1965 tggatgaattaaaatgggtatgtgttggattttgagttgcaggaac 2010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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