View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10451_low_19 (Length: 254)
Name: NF10451_low_19
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10451_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 13089519 - 13089279
Alignment:
| Q |
1 |
ccttttaggtgatgctcatgagtgtgggactacnnnnnnnnnnnnnattgaaaatttaaaatattgtaaatcccaataataaagaaaaattcttctaagc |
100 |
Q |
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| T |
13089519 |
ccttttaggtgatgctcatgagtgtgggactacttttgttttttt-attgaaaatttaaaatattgtaaatcccaataataaagaaaaattcttctaagc |
13089421 |
T |
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| Q |
101 |
ttttacatctatatctaagcataaacttattgccacgaggatggtccatacaagtaacaaatgctgggatatgataggttgcttcttcatgtgcaaataa |
200 |
Q |
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| T |
13089420 |
ttttacatctatatctaagcataaacttattgccacgaggatggtccatacaagtaacaaatgctgggatatgataggttgcttcttcatgtgcaaataa |
13089321 |
T |
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| Q |
201 |
attgaacttggtcatacttttggtagacaaaaatcatgttca |
242 |
Q |
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| T |
13089320 |
attgaacttggtcatacttttggtagacaaaaatcatgttca |
13089279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 13018086 - 13017891
Alignment:
| Q |
47 |
attgaaaatttaaaatattgtaaatcccaataataaagaaaaattcttctaagcttttacatctatatctaagcataaacttattgccacgaggatggtc |
146 |
Q |
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| T |
13018086 |
attgaaaatttaaaatattgtaaatcccaataataaagaaaaattcttctaagcttttacatctatatctaatcataaacttattgccacgaggatggtc |
13017987 |
T |
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| Q |
147 |
catacaagtaacaaatgctgggatatgataggttgcttcttcatgtgcaaataaattgaacttggtcatacttttggtagacaaaaatcatgttca |
242 |
Q |
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| T |
13017986 |
catacaagtaacaaatgctgggatatgataggttgcttcttcatgtgcaaataaattgaacttggtcatacttttggtagacaaaaatcatgttca |
13017891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13018134 - 13018102
Alignment:
| Q |
1 |
ccttttaggtgatgctcatgagtgtgggactac |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13018134 |
ccttttaggtgatgctcatgagtgtgggactac |
13018102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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