View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10451_low_2 (Length: 740)
Name: NF10451_low_2
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10451_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 11 - 507
Target Start/End: Original strand, 49016041 - 49016537
Alignment:
| Q |
11 |
cataggcaaactggtttagtcatcagtcatgtttaaacaattgttgggaattttcctggaatcggtgcaagttaaggctaaggtatgttgattttatttt |
110 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016041 |
cataggaaaactggtatagtcatcagtcatgtttaaacaattgttgggaattttcctggaatcggtgcaagttaaggctaaggtatgttgattttatttt |
49016140 |
T |
|
| Q |
111 |
ttctgaagctttatttttggcagaataagctaggaggcatcaagagtgacttcatagttcatccaattctgcaaagattagcccataaggtccttgtatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016141 |
ttctgaagctttatttttggcagaataagctaggaggcatcaagagtgacttcatagttcatccaattctgcaaagattagcccataaggtccttgtatt |
49016240 |
T |
|
| Q |
211 |
ctagagttgaaataataaattaaataaagagtgctacaaacatactctctaacacactctccttttgcttcaaattaatctagattccactaaatgattt |
310 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49016241 |
ctagagttgaactaataaattaaatgaagagtgctacaaacatactctctaacacactctccttttgcttaaaattaatctagattccactaaatgattt |
49016340 |
T |
|
| Q |
311 |
gggttctacatagagtttgtagtacccacataccatagcaatactgcagaaaaatttaagttaaactgcgttgacttgactctgtcacgttgtttggaat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016341 |
gggttctacatagagtttgtagtacccacataccatagcaatactgcagaaaaatttaagttaaactgcgttgacttgactctgtcacgttgtttggaat |
49016440 |
T |
|
| Q |
411 |
tatatactgtcccgtcatgattgttgtatcaatctattactaaaatatggcccagtagacacatgtcatttttctgtgtccaaaacgtttgtttaat |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016441 |
tatatactgtcccgtcatgattgttgtatcaatctattactaaaatatggcccagtagacacatgtcatttttctgtgtccaaaacgtttgtttaat |
49016537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 570 - 681
Target Start/End: Original strand, 49016600 - 49016711
Alignment:
| Q |
570 |
tgtgtattaaatttgtgaggtacatgtaaatagatagcttaacagtgagggtatttttgggccattgttggtttcatccggtgacttggtttcatccagt |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49016600 |
tgtgtattaaatttgtgaggtacatgtaaatagatagcttaacagtgagggtatttttgggccattgttcgtttcatccggtgacttggtttcatccagt |
49016699 |
T |
|
| Q |
670 |
gacttggtaggc |
681 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49016700 |
gacttggtaggc |
49016711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University