View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10451_low_23 (Length: 250)
Name: NF10451_low_23
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10451_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 22300117 - 22299877
Alignment:
| Q |
2 |
acgaaaaagttatacaccttctgttcctagattgtcacttttgtttcaannnnnnnngttaa-tatttagtattcagtctccaaatgatataagcctcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| | |
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| T |
22300117 |
acgaaaaagttatacaccttctgttcctagattgtcacttttgtttcaattttttttgttaaatattcagtattcagtctccaaatgatataagcctcat |
22300018 |
T |
|
| Q |
101 |
taaaacatgtgattagattcaaatgattggtcacttcaccaaataacaaaatatttgaaaaattccgagtacgattctcacgtggaacaatacttaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |
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| T |
22300017 |
taaaacatgtgattagattcaaatgattggtcacttcaccaaataacaaaatatttgaaaaaatccgagtaggattctcacgtggaagaatacttagttt |
22299918 |
T |
|
| Q |
201 |
atttatacttaccttacgattaaactttaaattttctgtgc |
241 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||||| |
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| T |
22299917 |
atctatacttaccttacggttaaactttaaattttctgtgc |
22299877 |
T |
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