View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10451_low_27 (Length: 240)

Name: NF10451_low_27
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10451_low_27
NF10451_low_27
[»] chr7 (14 HSPs)
chr7 (18-240)||(33194641-33194863)
chr7 (71-165)||(30774943-30775037)
chr7 (46-167)||(39786452-39786573)
chr7 (107-164)||(22931919-22931976)
chr7 (98-158)||(26241657-26241717)
chr7 (98-162)||(26203071-26203135)
chr7 (71-146)||(11740386-11740461)
chr7 (46-192)||(31850748-31850895)
chr7 (107-189)||(7833805-7833887)
chr7 (40-90)||(28004242-28004292)
chr7 (70-164)||(47537421-47537514)
chr7 (47-88)||(44377265-44377306)
chr7 (47-88)||(44386132-44386173)
chr7 (46-118)||(19677036-19677108)
[»] chr6 (7 HSPs)
chr6 (65-200)||(30929454-30929590)
chr6 (66-162)||(2911487-2911583)
chr6 (107-157)||(12677822-12677872)
chr6 (98-190)||(27082280-27082372)
chr6 (69-166)||(10008186-10008283)
chr6 (98-162)||(11101897-11101961)
chr6 (100-189)||(31223165-31223255)
[»] chr1 (14 HSPs)
chr1 (46-164)||(49731162-49731280)
chr1 (66-162)||(8279733-8279829)
chr1 (41-162)||(36160565-36160684)
chr1 (46-146)||(39238844-39238944)
chr1 (46-125)||(38169087-38169166)
chr1 (107-189)||(5178705-5178787)
chr1 (104-162)||(48887791-48887849)
chr1 (71-139)||(48502586-48502654)
chr1 (58-133)||(27524-27599)
chr1 (44-190)||(13969097-13969243)
chr1 (46-192)||(8001747-8001893)
chr1 (134-167)||(27160389-27160422)
chr1 (107-156)||(33148902-33148951)
chr1 (44-88)||(34347225-34347269)
[»] chr8 (11 HSPs)
chr8 (47-159)||(23797494-23797606)
chr8 (53-162)||(18131189-18131297)
chr8 (44-162)||(10451895-10452014)
chr8 (47-161)||(43917585-43917699)
chr8 (46-194)||(28462543-28462690)
chr8 (46-139)||(39534138-39534231)
chr8 (69-164)||(44655257-44655352)
chr8 (60-166)||(10029155-10029261)
chr8 (46-192)||(20542354-20542500)
chr8 (41-87)||(33944983-33945029)
chr8 (47-88)||(20164428-20164469)
[»] chr3 (16 HSPs)
chr3 (69-161)||(1711947-1712039)
chr3 (63-159)||(37043003-37043099)
chr3 (46-191)||(37822675-37822820)
chr3 (98-165)||(45408720-45408787)
chr3 (110-189)||(46647454-46647532)
chr3 (48-159)||(55446733-55446843)
chr3 (47-161)||(29373575-29373691)
chr3 (39-88)||(40460298-40460347)
chr3 (98-161)||(40843060-40843123)
chr3 (107-194)||(42437775-42437862)
chr3 (60-159)||(44698218-44698317)
chr3 (60-164)||(25319458-25319562)
chr3 (46-162)||(635705-635821)
chr3 (46-126)||(28709566-28709646)
chr3 (98-158)||(36436585-36436645)
chr3 (98-162)||(45054384-45054448)
[»] chr2 (13 HSPs)
chr2 (63-162)||(5525302-5525401)
chr2 (46-118)||(481455-481527)
chr2 (44-126)||(23453378-23453460)
chr2 (44-162)||(43131757-43131875)
chr2 (46-163)||(4978752-4978869)
chr2 (70-162)||(1870518-1870609)
chr2 (47-162)||(4652037-4652152)
chr2 (46-161)||(13738395-13738510)
chr2 (61-163)||(4996675-4996777)
chr2 (98-168)||(33609226-33609296)
chr2 (47-88)||(5444493-5444534)
chr2 (108-161)||(34390237-34390290)
chr2 (107-162)||(604730-604788)
[»] chr5 (8 HSPs)
chr5 (72-192)||(6830235-6830355)
chr5 (32-189)||(41645004-41645159)
chr5 (53-189)||(1447561-1447697)
chr5 (40-87)||(8400160-8400207)
chr5 (46-163)||(14863333-14863449)
chr5 (46-133)||(2611148-2611236)
chr5 (150-194)||(26139660-26139704)
chr5 (37-117)||(30293814-30293894)
[»] chr4 (14 HSPs)
chr4 (46-190)||(20775041-20775185)
chr4 (46-146)||(41142294-41142394)
chr4 (53-161)||(52370372-52370480)
chr4 (70-161)||(55090779-55090869)
chr4 (46-191)||(9119209-9119354)
chr4 (44-189)||(12094928-12095073)
chr4 (46-162)||(34236177-34236293)
chr4 (107-156)||(36752713-36752762)
chr4 (46-139)||(31241951-31242045)
chr4 (46-87)||(19480708-19480749)
chr4 (38-87)||(43556645-43556694)
chr4 (46-162)||(51100026-51100143)
chr4 (98-150)||(5645700-5645751)
chr4 (32-88)||(31861624-31861680)
[»] scaffold0036 (1 HSPs)
scaffold0036 (47-133)||(36558-36644)
[»] scaffold0329 (1 HSPs)
scaffold0329 (70-118)||(7400-7448)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33194863 - 33194641
Alignment:
Q  18 gttgctaatcagtatcctaagagtattagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||    
T  33194863 gttgctaatcagtatcctaagagtattagttaaagaatccataaataaaagttttgtcttaaaaatataaactatcacatttgattaagtaatgattaca 33194764  T
Q  118 ctactttttattaaaattttacttgttttagttgtttaaccaatgtcttgggagcaatggttagcattctccaataatttatgttatccattccttacac 217  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  33194763 ctactttttattaaaaatttacttattttagttgcttaaccaatatcttggggacaatggttagcattctccaataatttatgttatccattccttacac 33194664  T
Q  218 agatccaataggttcaagtacac 240  Q
    | ||| |||| ||||||||||||    
T  33194663 aaatctaataagttcaagtacac 33194641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 30774943 - 30775037
Alignment:
Q  71 ttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtct 165  Q
    |||||||||||||||||||| ||||| || || |  ||||||||||||| ||||||||||||| |||||||  ||||| || |||||||||||||    
T  30774943 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacactgctttttattaaaaatttactttgtttagctggttaaccaatgtct 30775037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 39786452 - 39786573
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| ||||| ||||||| ||   |||||||||||||||||| | | ||  ||||||||||||| |||||||||||||| || ||||  ||| ||||||    
T  39786452 gttaaggaatctataaatagaaaacttgtcttgaaaatataagttttaacttttgattaaataataattacactacttttaataaaaaagttatttgttt 39786551  T
Q  146 tagttgtttaaccaatgtcttg 167  Q
    | |||| |||||||||| ||||    
T  39786552 tggttgcttaaccaatgccttg 39786573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 22931919 - 22931976
Alignment:
Q  107 taatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtc 164  Q
    |||| |||||||||||||||||| ||| ||||||| |||| |||||||||||||||||    
T  22931919 taataattacactactttttattgaaaatttacttattttggttgtttaaccaatgtc 22931976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 26241657 - 26241717
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaacc 158  Q
    ||||| ||||||| |||| |||||||||||||||||  |||||||||||||||| ||||||    
T  26241657 ttgatcaaataataattatactactttttattaaaaagttacttgttttagttgcttaacc 26241717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 26203071 - 26203135
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatg 162  Q
    |||| ||| |||| ||||||| |||||||| ||||||||||| | ||||||||| ||||||||||    
T  26203071 ttgactaactaattattacaccactttttaataaaattttacctcttttagttgcttaaccaatg 26203135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 11740386 - 11740461
Alignment:
Q  71 ttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgtttt 146  Q
    ||||||||||||||||| || | ||  ||||| || |||| ||||||| |||||||| ||||||||||||| ||||    
T  11740386 ttgtcttgaaaatataaactgttacttttgatcaactaattattacaccactttttaataaaattttacttctttt 11740461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 31850748 - 31850895
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactacttttt-attaaaattttacttgtt 144  Q
    |||||| ||||||||||||||| |||||||||  ||||||||| | | ||  || || ||||||||||||||  | ||||| || ||||  |||||||||    
T  31850748 gttaaaaaatccataaataaaaattttgtcttagaaatataagatgttacttttaataaaataatgattacataattttttcataaaaaacttacttgtt 31850847  T
Q  145 ttagttgtttaaccaatgtcttgggagcaatggttagcattctccaat 192  Q
    |||| || ||||||| |  ||| |||||| |  ||| |||||||||||    
T  31850848 ttagatgcttaaccattacctttggagcactaattaacattctccaat 31850895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 7833805 - 7833887
Alignment:
Q  107 taatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtcttgggagcaatggttagcattctcc 189  Q
    |||| ||| |||||||||||| |||||| ||||||||||| | || |||||||||| | | || ||| |||||| ||||||||    
T  7833805 taattattgcactactttttaataaaatcttacttgttttggctgcttaaccaatgccctcggggcattggttaacattctcc 7833887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 28004292 - 28004242
Alignment:
Q  40 gtattagttaaagaatccataaataaaagttttgtcttgaaaatataagct 90  Q
    ||||| |||||| |||| | |||||||| ||||||||||||||||||||||    
T  28004292 gtattggttaaaaaatctaaaaataaaatttttgtcttgaaaatataagct 28004242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 47537514 - 47537421
Alignment:
Q  70 tttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtc 164  Q
    ||||||||||||||||||| | | |   |||||||| |||| ||||||| |||||||| |||||  |||| ||||||||||| ||||| ||||||    
T  47537514 tttgtcttgaaaatataagttttgatttttgattaagtaataattacacaacttttta-taaaaagttacctgttttagttgcttaactaatgtc 47537421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 44377265 - 44377306
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaaatataag 88  Q
    |||| |||||||| ||||||||||||||||| ||||||||||    
T  44377265 ttaatgaatccattaataaaagttttgtcttaaaaatataag 44377306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 44386132 - 44386173
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaaatataag 88  Q
    |||| |||||||| ||||||||||||||||| ||||||||||    
T  44386132 ttaatgaatccattaataaaagttttgtcttaaaaatataag 44386173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 19677108 - 19677036
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacac 118  Q
    ||||| ||||| | ||||| || |||||||||||||||||||| | | ||  |||||||| ||||||||||||    
T  19677108 gttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttacttttgattaagtaatgattacac 19677036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 30929590 - 30929454
Alignment:
Q  65 aaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaat-tttacttgttttagttgtttaaccaatgt 163  Q
    ||||||||| ||||||||| |||| | | ||| ||||| ||||||| |||| |||||||||||||||||  ||||||||||||||| | ||||||||||     
T  30929590 aaagttttgccttgaaaatttaagatgttacatttgatcaaataataattatactactttttattaaaaaatttacttgttttagtcgcttaaccaatgc 30929491  T
Q  164 cttgggagcaatggttagcattctccaataatttatg 200  Q
    | | |||||| | ||||||||||||| ||||||||||    
T  30929490 ccttggagcactagttagcattctcctataatttatg 30929454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 2911487 - 2911583
Alignment:
Q  66 aagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatg 162  Q
    |||||||||||||||||| |||| | | ||| ||||| || ||||||||| |||||||||| ||||||  ||| |||||||| ||| ||||||||||    
T  2911487 aagttttgtcttgaaaatgtaagatgttacatttgatcaagtaatgattatactacttttttttaaaaacttatttgttttaattgcttaaccaatg 2911583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 12677872 - 12677822
Alignment:
Q  107 taatgattacactactttttattaaaattttacttgttttagttgtttaac 157  Q
    |||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  12677872 taatgattacactactttttattaaaaacttacttgttttagttgcttaac 12677822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 27082372 - 27082280
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtcttgggagcaatggttagcattctcca 190  Q
    ||||| ||||||| ||||||| |||||||  | ||| |||||||||||| ||||||||||||||||| | || ||| |  |||||||||||||    
T  27082372 ttgatcaaataatcattacacaactttttcatgaaaatttacttgttttggttgtttaaccaatgtccttggggcactatttagcattctcca 27082280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 10008283 - 10008186
Alignment:
Q  69 ttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtctt 166  Q
    ||||||||| ||||||||| |  | ||  ||||| || |||| ||||||| |||||||| |||||  |||||| |||| |||| ||||||||||||||    
T  10008283 ttttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccactttttaataaaaacttacttcttttggttgcttaaccaatgtctt 10008186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 11101961 - 11101897
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatg 162  Q
    |||| ||| |||| |||| ||||||||||| |||||| |||| | ||||||||| ||||||||||    
T  11101961 ttgactaactaattattaaactactttttaataaaatcttacctcttttagttgcttaaccaatg 11101897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 31223255 - 31223165
Alignment:
Q  100 gattaaataatgattacactacttttt--attaaaattttacttgttttagttgtttaaccaatgtcttgggagcaatggttagcattctcc 189  Q
    |||||| |||||||||||| |||||||  || ||||  ||||||||||| | ||||||||||||| | | ||||||  ||||||||||||||    
T  31223255 gattaagtaatgattacacaacttttttcatgaaaa-cttacttgttttggatgtttaaccaatgcccttggagcaccggttagcattctcc 31223165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 49731162 - 49731280
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| ||||||| || || ||||||||||||||| || |||| | | ||| ||||  ||||||| |||| |||||||||||||||||  ||||||||||    
T  49731162 gttaaggaatccaaaagtagaagttttgtcttgaagatgtaagatgttacatttgaccaaataataattatactactttttattaaaaacttacttgttt 49731261  T
Q  146 tagttgtttaaccaatgtc 164  Q
    |||||||||||||||||||    
T  49731262 tagttgtttaaccaatgtc 49731280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 8279829 - 8279733
Alignment:
Q  66 aagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatg 162  Q
    ||||||||||||||||||||||| | | ||| |||| ||||||||||||| || || |||||||||||| ||| |||||||||||| ||||||||||    
T  8279829 aagttttgtcttgaaaatataagatgttacatttgactaaataatgattatacaacgttttattaaaatcttaattgttttagttgattaaccaatg 8279733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 36160684 - 36160565
Alignment:
Q  41 tattagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttact 140  Q
    |||| ||||||||||||||||||| ||||||||||||  ||||||||||  | ||| ||||  || |||| |||||||||||||||||||| |  |||||    
T  36160684 tattggttaaagaatccataaatagaagttttgtcttagaaatataagc--ttacatttgacaaagtaataattacactactttttattaagaacttact 36160587  T
Q  141 tgttttagttgtttaaccaatg 162  Q
    ||||||| ||| ||||||||||    
T  36160586 tgttttaattgcttaaccaatg 36160565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 39238944 - 39238844
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| |||||||||||||||| |||| |||| ||||| |||| | | ||| ||||| || |||||||||||||| ||||||||||||  ||||||||||    
T  39238944 gttaaggaatccataaataaaaattttctcttaaaaatgtaagttgttacatttgatcaagtaatgattacactattttttattaaaaacttacttgttt 39238845  T
Q  146 t 146  Q
    |    
T  39238844 t 39238844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 38169166 - 38169087
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttt 125  Q
    ||||| ||||||||| ||| ||| ||| ||||||||||||||| | | ||||||||| || |||||||||||||| ||||    
T  38169166 gttaaggaatccatatatagaagctttatcttgaaaatataagttgttacacttgatcaagtaatgattacactaatttt 38169087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 5178787 - 5178705
Alignment:
Q  107 taatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtcttgggagcaatggttagcattctcc 189  Q
    |||| ||||||| |||||||| ||||||||||| | |||||| || |||||||||| | |||| ||| |||||| ||||||||    
T  5178787 taattattacaccactttttaataaaattttacctattttagctgcttaaccaatgccgtgggggcactggttaacattctcc 5178705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 48887849 - 48887791
Alignment:
Q  104 aaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatg 162  Q
    ||||||||||| || ||||||| |||||||  |||||||||||||||| ||||||||||    
T  48887849 aaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatg 48887791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 48502654 - 48502586
Alignment:
Q  71 ttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttac 139  Q
    |||||||||||||||||||| | ||  |||| ||| |||| ||||||| |||||||| |||||||||||    
T  48502654 ttgtcttgaaaatataagctgttacttttgactaactaattattacacaactttttaataaaattttac 48502586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 27599 - 27524
Alignment:
Q  58 ataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaa 133  Q
    ||||||||||  |||||||| |||||||||| | | ||  |||||||| |||| ||||||||||||||||| ||||    
T  27599 ataaataaaaaatttgtctttaaaatataagttttgacttttgattaagtaataattacactactttttataaaaa 27524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 13969097 - 13969243
Alignment:
Q  44 tagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgt 143  Q
    ||||||| ||||| | ||||| || |||||||||||||||||||  | | ||  || ||||| |||| ||||||| | |||||  |||||  ||||||||    
T  13969097 tagttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttacttgt 13969196  T
Q  144 tttagttgtttaaccaat-gtcttgggagcaatggttagcattctcca 190  Q
    ||| |||| |||||||||  ||||||| ||| |||||| |||||||||    
T  13969197 tttggttgcttaaccaatactcttggg-gcactggttaacattctcca 13969243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 8001747 - 8001893
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| ||||| | ||||| || |||| ||||||||||||||| | | ||  ||||| || |||||||||||| ||||||   | ||| |||||||||||    
T  8001747 gttaaggaatctagaaatagaaattttatcttgaaaatataagatgttacttttgataaagtaatgattacacaacttttacatgaaaatttacttgttt 8001846  T
Q  146 tagttgtttaaccaatgtcttgggagcaatggttagcattctccaat 192  Q
    ||| || ||||||| || | |  | ||| | ||||||||||||||||    
T  8001847 tagatgcttaaccattggccttagggcactcgttagcattctccaat 8001893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 27160389 - 27160422
Alignment:
Q  134 ttttacttgttttagttgtttaaccaatgtcttg 167  Q
    ||||||||||||| ||||||||||||||||||||    
T  27160389 ttttacttgttttggttgtttaaccaatgtcttg 27160422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 33148951 - 33148902
Alignment:
Q  107 taatgattacactactttttattaaaattttacttgttttagttgtttaa 156  Q
    |||| ||||||||||||||||||||||  |||||| ||||||||| ||||    
T  33148951 taataattacactactttttattaaaaacttacttattttagttgcttaa 33148902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 34347225 - 34347269
Alignment:
Q  44 tagttaaagaatccataaataaaagttttgtcttgaaaatataag 88  Q
    ||||||||||||| ||||||| || |||||||||| |||||||||    
T  34347225 tagttaaagaatctataaatataaattttgtcttggaaatataag 34347269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 23797494 - 23797606
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgtttt 146  Q
    |||| |||||| |||||| ||||||| ||||||||||||||  | ||||||||||  || |||| ||| ||  |||||| ||||||| ||||||||||||    
T  23797494 ttaatgaatccttaaatagaagttttatcttgaaaatataaattgtcacacttgaccaagtaataatttcatcacttttcattaaaaatttacttgtttt 23797593  T
Q  147 agttgtttaacca 159  Q
    |||||||||||||    
T  23797594 agttgtttaacca 23797606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 18131297 - 18131189
Alignment:
Q  53 aatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgt 152  Q
    |||||||||||| ||  ||||||||||||||||||| | | ||   ||||||| |||| |||||||||| ||||| |||||  ||||||||||| ||||     
T  18131297 aatccataaatagaaaatttgtcttgaaaatataagttttgactactgattaagtaataattacactac-ttttaataaaaagttacttgttttggttgc 18131199  T
Q  153 ttaaccaatg 162  Q
    ||||||||||    
T  18131198 ttaaccaatg 18131189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 10452014 - 10451895
Alignment:
Q  44 tagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgatt-acactactttttattaaaattttacttg 142  Q
    ||||||| ||| | |||||||||| |||||| || |||||||||| | | ||  |||||||| |||| ||| |||| | ||||||| ||||  |||||||    
T  10452014 tagttaaggaaactataaataaaaattttgtattaaaaatataagttttgacttttgattaagtaataatttacaccattttttataaaaaaattacttg 10451915  T
Q  143 ttttagttgtttaaccaatg 162  Q
    ||||||||| ||||||||||    
T  10451914 ttttagttgcttaaccaatg 10451895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 43917699 - 43917585
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgtttt 146  Q
    |||||||||| | |||||||| ||||||||||||||||||||   | ||  || || ||||||| ||||||| | |||||  ||||| ||||||||||||    
T  43917699 ttaaagaatctacaaataaaatttttgtcttgaaaatataaggcgttacttttaatcaaataataattacacaatttttttataaaaatttacttgtttt 43917600  T
Q  147 agttgtttaaccaat 161  Q
     | || |||||||||    
T  43917599 ggatgcttaaccaat 43917585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 28462543 - 28462690
Alignment:
Q  46 gttaaagaatccataaataaaagtttt-gtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgtt 144  Q
    ||||||||||| ||||||| || |||| |||||| |||||||| |||||||  || ||||| |||| |||||| ||||||| || |||| || ||||  |    
T  28462543 gttaaagaatctataaatagaattttttgtcttggaaatataaactatcactttttattaagtaataattacattacttttaataaaaactt-acttcat 28462641  T
Q  145 ttagttgtttaaccaatgtcttgggagcaatggttagcattctccaataa 194  Q
    || || ||||||||||||||  ||||||| |||||   ||||||||||||    
T  28462642 ttggt-gtttaaccaatgtcccgggagcactggtttatattctccaataa 28462690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 39534138 - 39534231
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttac 139  Q
    ||||||||||| |||| || || || |||||||||||||||| || |||| ||| || || |||| |||||| ||||||||| ||||| |||||    
T  39534138 gttaaagaatctataattagaatttctgtcttgaaaatataaactgtcaccctttatcaagtaataattacattactttttaataaaaatttac 39534231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 44655257 - 44655352
Alignment:
Q  69 ttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtc 164  Q
    |||||||||| ||| ||||| | | ||| ||||  || |||| ||||||||||||||||||||||  ||| || |||| ||||||||| |||||||    
T  44655257 ttttgtcttggaaaaataagttgttacaattgaccaagtaataattacactactttttattaaaaacttatttattttggttgtttaatcaatgtc 44655352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 10029261 - 10029155
Alignment:
Q  60 aaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaacca 159  Q
    |||||||| |||| ||||| ||||||||| | | ||  ||||| || ||||||||| || |||||||  ||||| |||||||| ||| | || |||||||    
T  10029261 aaataaaaattttatcttggaaatataagatgttacttttgatcaagtaatgattatacaactttttcataaaaatttacttgatttggatgcttaacca 10029162  T
Q  160 atgtctt 166  Q
    |||||||    
T  10029161 atgtctt 10029155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 20542500 - 20542354
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| ||||| | ||||| || ||| |||||| ||||||||| | | ||  |||||||| ||||||||||||   ||||| ||||||  ||||| ||||    
T  20542500 gttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttacttttgattaagtaatgattacacacttttttcttaaaaacttactcgttt 20542401  T
Q  146 tagttgtttaaccaatgtcttgggagcaatggttagcattctccaat 192  Q
    | | || |||||||||| | | || |||  |||||||||||||||||    
T  20542400 tggatgcttaaccaatgcccttggggcacgggttagcattctccaat 20542354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 33944983 - 33945029
Alignment:
Q  41 tattagttaaagaatccataaataaaagttttgtcttgaaaatataa 87  Q
    ||||||||||  ||||| ||||||||| |||||||||||||||||||    
T  33944983 tattagttaagaaatccttaaataaaatttttgtcttgaaaatataa 33945029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 20164428 - 20164469
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaaatataag 88  Q
    |||| |||||||| ||||||||||||||||| ||||||||||    
T  20164428 ttaatgaatccattaataaaagttttgtcttaaaaatataag 20164469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 1711947 - 1712039
Alignment:
Q  69 ttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaat 161  Q
    |||||||||||||||||||| | | ||| |||| ||| |||| |||| |||| |||||||||||| ||||||| |||||||||||||||||||    
T  1711947 ttttgtcttgaaaatataagatgttacatttgactaagtaataattatactattttttattaaaaatttacttattttagttgtttaaccaat 1712039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 37043003 - 37043099
Alignment:
Q  63 taaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaacca 159  Q
    |||||||||||||||| || | || | | | ||| ||||| || ||||||||| |||||||||||||||||  ||||||| ||||||||||||||||    
T  37043003 taaaagttttgtcttgtaattgtaggatgttacatttgatcaagtaatgattatactactttttattaaaaacttacttgatttagttgtttaacca 37043099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 37822820 - 37822675
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||||||||||| ||||| |  |||| | |||||||| |||| | | ||| ||||| |  ||||||| | |||| ||||||||||||  |||| |||||    
T  37822820 gttaaagaatccaaaaatagatattttatgttgaaaatgtaagatgttacatttgatcaggtaatgataatactagtttttattaaaaacttacatgttt 37822721  T
Q  146 tagttgtttaaccaatgtcttgggagcaatggttagcattctccaa 191  Q
    || |||||||||||||||||   | ||| | |||||||||||||||    
T  37822720 taattgtttaaccaatgtctatagcgcattagttagcattctccaa 37822675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 45408720 - 45408787
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtct 165  Q
    |||||||| ||||  |||||| | ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  45408720 ttgattaagtaatatttacaccattttttataaaaatgttacttgtttttgttgtttaaccaatgtct 45408787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 46647532 - 46647454
Alignment:
Q  110 tgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtcttgggagcaatggttagcattctcc 189  Q
    ||||||||||||||||||||||||  ||||||||| |||||  |||||||||||| | |  ||| |||||||||||||||    
T  46647532 tgattacactactttttattaaaaacttacttgttatagtt-cttaaccaatgtccttgaggcactggttagcattctcc 46647454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 55446843 - 55446733
Alignment:
Q  48 taaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgtttta 147  Q
    ||||||||| | |||||||| |||||||||| ||||||||| | | ||  || || || |||||||||||| |||||||| |||||  |||||| |||||    
T  55446843 taaagaatctacaaataaaaattttgtcttggaaatataagatgttacttttaataaagtaatgattacacaacttttta-taaaaacttacttctttta 55446745  T
Q  148 gttgtttaacca 159  Q
    | ||||||||||    
T  55446744 gatgtttaacca 55446733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 29373575 - 29373691
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaa--atataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgtt 144  Q
    |||| ||||||||||||||||  ||||| ||||||  ||||||| | | |   ||||| ||||| |||||||||| | |||| |||||| |||| ||| |    
T  29373575 ttaaggaatccataaataaaaaatttgttttgaaagtatataagttcttatgtttgatcaaatattgattacactccattttcttaaaaatttatttgct 29373674  T
Q  145 ttagttgtttaaccaat 161  Q
    |||||||||||||||||    
T  29373675 ttagttgtttaaccaat 29373691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 40460347 - 40460298
Alignment:
Q  39 agtattagttaaagaatccataaataaaagttttgtcttgaaaatataag 88  Q
    |||||||||||||||||| |||||||||| |||| | |||||||||||||    
T  40460347 agtattagttaaagaatctataaataaaaattttattttgaaaatataag 40460298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 40843123 - 40843060
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaat 161  Q
    ||||| || |||| |||| | ||||||||||||||| |||| || |||||||||||||||||||    
T  40843123 ttgatcaagtaataattatattactttttattaaaaatttatttattttagttgtttaaccaat 40843060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 42437775 - 42437862
Alignment:
Q  107 taatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtcttgggagcaatggttagcattctccaataa 194  Q
    |||||||||||  |||||||  ||||||||| | |||||| | || |||||||||| | | || ||| ||||||||||||||||||||    
T  42437775 taatgattacataactttttcataaaattttgcgtgttttggatgcttaaccaatgcccttggggcactggttagcattctccaataa 42437862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 44698317 - 44698218
Alignment:
Q  60 aaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaacca 159  Q
    ||||| || |||||||||||||||||||| | | ||  ||||| ||||||||||||||| | |||||  |||||  ||| ||||||||| | ||||||||    
T  44698317 aaatagaaattttgtcttgaaaatataagatgttacttttgataaaataatgattacacaattttttcataaaaacttatttgttttagatatttaacca 44698218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 25319562 - 25319458
Alignment:
Q  60 aaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactacttttt-attaaaattttacttgttttagttgtttaacc 158  Q
    |||||||| |||||| ||||||||||||  | | ||  |||| ||||||||||||||||  |||||  ||||||| || | ||||||||| |||||||||    
T  25319562 aaataaaaattttgtattgaaaatataaaatgttacttttgactaaataatgattacacaccttttacattaaaacttaa-ttgttttagatgtttaacc 25319464  T
Q  159 aatgtc 164  Q
    ||||||    
T  25319463 aatgtc 25319458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 635705 - 635821
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| ||||| | ||||| || |||||||||||| | ||||| | | ||  ||||||||||||||||||||| |||||| | |||||  |||  |||||    
T  635705 gttaaggaatctacaaatagaaattttgtcttgaataaataagatgttacttttgattaaataatgattacacaacttttcaataaaaacttatatgttt 635804  T
Q  146 tagttgtttaaccaatg 162  Q
    | | || ||||||||||    
T  635805 tggatgcttaaccaatg 635821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 28709566 - 28709646
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactacttttt 126  Q
    ||||||||||| ||||||| || |||| ||||||||||||||  | | ||  ||||| |||||||||||| || |||||||    
T  28709566 gttaaagaatctataaatagaaattttatcttgaaaatataaaatgttacttttgatcaaataatgattatacaacttttt 28709646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 36436645 - 36436585
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaacc 158  Q
    ||||| ||||||| ||| |||||||||||| |||||| ||| || |||||| |||||||||    
T  36436645 ttgatcaaataattattgcactactttttaataaaatcttatttattttagatgtttaacc 36436585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 45054448 - 45054384
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatg 162  Q
    |||| ||| |||| ||||||||| |||||| |||||| |||||| |||||  |||||||||||||    
T  45054448 ttgactaactaattattacactattttttaataaaatcttacttcttttaactgtttaaccaatg 45054384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 5525302 - 5525401
Alignment:
Q  63 taaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatg 162  Q
    ||||||||||||||||||||  |||| | | ||| ||||  |||||||||||| |||||||||||||||||  |||||| ||||||||| ||||||||||    
T  5525302 taaaagttttgtcttgaaaacgtaagatgttacatttgaccaaataatgattatactactttttattaaaaacttacttattttagttgcttaaccaatg 5525401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 481527 - 481455
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacac 118  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||| ||  ||||| || |||| |||||||    
T  481527 gttaaagaatccataaataaaagttgtgtcttgaaaacataagttattacgtttgatcaagtaataattacac 481455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 23453460 - 23453378
Alignment:
Q  44 tagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactacttttt 126  Q
    ||||||| ||||| | |||||||| |||||||||||||||||||| | | ||  ||||| |||||| |||||||| |||||||    
T  23453460 tagttaaggaatctacaaataaaaattttgtcttgaaaatataagatgttacttttgatcaaataaagattacacaacttttt 23453378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 43131757 - 43131875
Alignment:
Q  44 tagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgt 143  Q
    |||||||||||||| | ||||||| ||||||||| ||||| |||| |   ||  ||||| || |||| |||||||||| ||||  |||||  ||||||||    
T  43131757 tagttaaagaatccttgaataaaaattttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgt 43131856  T
Q  144 tttagttgtttaaccaatg 162  Q
    ||| ||||||||| |||||    
T  43131857 tttggttgtttaatcaatg 43131875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 4978752 - 4978869
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    |||||| |||| || |||| ||||||||||||||||||||||| | | ||  ||||| || |||||||||||| || ||||  |||||  ||| || |||    
T  4978752 gttaaaaaatctattaatagaagttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattt 4978851  T
Q  146 tagttgtttaaccaatgt 163  Q
    | | ||||||||||||||    
T  4978852 tggatgtttaaccaatgt 4978869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 1870518 - 1870609
Alignment:
Q  70 tttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatg 162  Q
    ||||||||||||||||||||| | ||  |||||||| |||| ||||||| | |||||  |||||  ||||||||||| |||| ||||||||||    
T  1870518 tttgtcttgaaaatataagctttgacttttgattaagtaataattacac-atttttttataaaaagttacttgtttttgttgcttaaccaatg 1870609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 4652037 - 4652152
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgtttt 146  Q
    ||||||||||||||| |  |||||||||||||||||| |||||| | ||| || |  || ||||||||||||   ||||||| ||||  |||||| ||||    
T  4652037 ttaaagaatccataagttgaagttttgtcttgaaaatgtaagctgttacatttaaccaagtaatgattacacatatttttataaaaaacttacttatttt 4652136  T
Q  147 agttgtttaaccaatg 162  Q
    | ||| |||| |||||    
T  4652137 atttgcttaatcaatg 4652152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 13738395 - 13738510
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| ||||| |||||||||| |||||| ||||||||||||| | | ||   |||| || |||||||||||| | |||||  |||||  ||||||||||    
T  13738395 gttaaggaatctataaataaaaattttgttttgaaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgttt 13738494  T
Q  146 tagttgtttaaccaat 161  Q
    | | || |||||||||    
T  13738495 tggatgcttaaccaat 13738510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 4996675 - 4996777
Alignment:
Q  61 aataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaa 160  Q
    |||| ||||||||||||||||||||||| | | ||  ||||| || |||||||||||| || ||||  |||||  ||| || |||| | |||||||||||    
T  4996675 aatagaagttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaa 4996774  T
Q  161 tgt 163  Q
    |||    
T  4996775 tgt 4996777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 33609226 - 33609296
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtcttgg 168  Q
    ||||| ||||||| | ||||||| ||||||||||||  ||| || ||||| ||| ||||||||||||||||    
T  33609226 ttgatcaaataataagtacactattttttattaaaaacttatttattttaattgcttaaccaatgtcttgg 33609296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 5444493 - 5444534
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaaatataag 88  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  5444493 ttaaagaaactataaataaaaattttgtcttgaaaatataag 5444534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 34390290 - 34390237
Alignment:
Q  108 aatgattacactactttttattaaaattttacttgttttagttgtttaaccaat 161  Q
    |||||||| |||| |||||||||||| |||| |||||||||||| |||| ||||    
T  34390290 aatgattatactattttttattaaaaatttagttgttttagttgcttaatcaat 34390237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 604788 - 604730
Alignment:
Q  107 taatgattacactactttttattaaaattttac---ttgttttagttgtttaaccaatg 162  Q
    ||||||||| ||||||||||||||||| |||||   ||||||||| || ||||||||||    
T  604788 taatgattatactactttttattaaaaatttactatttgttttagatgcttaaccaatg 604730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 6830355 - 6830235
Alignment:
Q  72 tgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaatgtcttgggag 171  Q
    ||||||||||||||||| | | | | |||||| |||||| |||||||||||||| || ||||  ||||||||||| |||| |||||||||| |||| ||     
T  6830355 tgtcttgaaaatataagttctgaaatttgattcaataataattacactacttttaataaaaaaattacttgttttggttgcttaaccaatgccttgagaa 6830256  T
Q  172 caatggttagcattctccaat 192  Q
     | || ||| |||||||||||    
T  6830255 tattgtttaacattctccaat 6830235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 41645159 - 41645004
Alignment:
Q  32 tcctaagagtattagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaa 131  Q
    |||| |||| ||| ||||||||||| |||||||||| |||||||| ||||||||||| ||| |   || || || |||||||||||| || ||| || ||    
T  41645159 tcctcagagcattggttaaagaatctataaataaaaattttgtctagaaaatataagatattattttttatcaagtaatgattacacaac-tttcatgaa 41645061  T
Q  132 aattttacttgttttagttgtttaaccaatgtcttgggagcaatggttagcattctcc 189  Q
    || ||||||| |||||| || |||| ||||| |||  | |||||||||| ||||||||    
T  41645060 aa-tttacttattttagatgcttaagcaatgacttttgtgcaatggttaacattctcc 41645004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 1447561 - 1447697
Alignment:
Q  53 aatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgt 152  Q
    ||||||||| || || |||| | ||| ||||||||||| | ||| ||||  || |||| |||||||||||||| |||||||  |||||| |||| ||||     
T  1447561 aatccataagtagaaattttattttggaaatataagctgttacagttgaccaagtaataattacactacttttcattaaaaacttacttatttttgttgc 1447660  T
Q  153 ttaaccaatgtcttgggagcaatggttagcattctcc 189  Q
    |||||||||| | |  | ||||| |||||||||||||    
T  1447661 ttaaccaatgccctaagggcaatagttagcattctcc 1447697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 8400160 - 8400207
Alignment:
Q  40 gtattagttaaagaatccataaataaaagttttgtcttgaaaatataa 87  Q
    ||||| ||||||||||||||||||| || |||||||||||||||||||    
T  8400160 gtatttgttaaagaatccataaatataaattttgtcttgaaaatataa 8400207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 14863449 - 14863333
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||||||||| ||||||| || || |||||||||||||||| || ||||  || || || |||| |||||| || |||||| |||||  |||||| |||    
T  14863449 gttaaagaatctataaatataatttatgtcttgaaaatataaactgtcactttttatcaagtaataattacattaatttttaataaaaacttactt-ttt 14863351  T
Q  146 tagttgtttaaccaatgt 163  Q
    | | || |||||||||||    
T  14863350 ttggtgcttaaccaatgt 14863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 2611148 - 2611236
Alignment:
Q  46 gttaaagaatccataaataaaagttt-tgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaa 133  Q
    ||||| ||||| ||||||| || ||| ||||||| ||||||||||| ||||  || ||||| |||| |||||| ||||||||| |||||    
T  2611148 gttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattacattactttttaataaaa 2611236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 26139704 - 26139660
Alignment:
Q  150 tgtttaaccaatgtcttgggagcaatggttagcattctccaataa 194  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||||    
T  26139704 tgtttaaccaatgtcttgggagcaccggttaacattctcctataa 26139660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 30293814 - 30293894
Alignment:
Q  37 agagtattagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattaca 117  Q
    |||||||| ||||||||||| | ||||| || ||||||||| |||||||||| | | ||  ||||| || |||||||||||    
T  30293814 agagtattggttaaagaatctacaaatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattaca 30293894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 20775185 - 20775041
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| ||||| ||||||||||  ||||||||  ||||||||| ||| |   ||||| ||||||| ||||||  |||||||  |||||  ||||||||||    
T  20775185 gttaatgaatctataaataaaaaatttgtcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaacttacttgttt 20775086  T
Q  146 tagttgtttaaccaatgtcttgggagcaatggttagcattctcca 190  Q
    | | || |||||||||||||| |||||| |  |||||||||||||    
T  20775085 tggatgcttaaccaatgtctttggagcactatttagcattctcca 20775041  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 41142294 - 41142394
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||| |||| ||| ||||||| |||||||||||||| ||||| | | ||  ||||||||||||| |||||| ||||||||  | ||| |||||||||||    
T  41142294 gttaaggaattcatgaataaaaattttgtcttgaaaaaataaggtcttacttttgattaaataataattacattacttttttgtgaaaatttacttgttt 41142393  T
Q  146 t 146  Q
    |    
T  41142394 t 41142394  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 52370372 - 52370480
Alignment:
Q  53 aatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgt 152  Q
    ||||||||||||||| |||||| ||| |||| |||||| | ||| ||||  || |||| ||||||||||| ||||||||||  ||| || ||||| |||     
T  52370372 aatccataaataaaaattttgttttggaaatgtaagctgttacaattgaccaagtaataattacactactatttattaaaaacttatttattttaattgc 52370471  T
Q  153 ttaaccaat 161  Q
    |||||||||    
T  52370472 ttaaccaat 52370480  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 55090869 - 55090779
Alignment:
Q  70 tttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttttagttgtttaaccaat 161  Q
    ||||||||||||||||||| | | ||  |||||||| | || ||||||| |||||||| |||||  |||||||||||||||| |||||||||    
T  55090869 tttgtcttgaaaatataagttttgacttttgattaagttataattacacaacttttta-taaaaagttacttgttttagttgcttaaccaat 55090779  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 9119354 - 9119209
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgttt 145  Q
    ||||||||||| ||||||| ||  |||||  |||||||||||| | | ||  |||||||| |||  |||||||||||||| || ||||  ||||||||||    
T  9119354 gttaaagaatctataaatagaaaatttgtggtgaaaatataagttttgacttttgattaagtaacaattacactacttttaataaaaaaattacttgttt 9119255  T
Q  146 tagttgtttaaccaatgtcttgggagcaatggttagcattctccaa 191  Q
    | |||| |||||| ||  |||  ||||| |  ||||||||||||||    
T  9119254 tggttgcttaaccgatacctttagagcactatttagcattctccaa 9119209  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 12095073 - 12094928
Alignment:
Q  44 tagttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttacttgt 143  Q
    ||||||| ||||| | ||||| || |||||  ||||||||||||| ||| ||  ||||| || |||||||||||| |||||||  |||||  |||||| |    
T  12095073 tagttaaggaatctacaaatagaaattttgcattgaaaatataagatattacttttgataaagtaatgattacacaactttttcataaaaacttacttat 12094974  T
Q  144 tttagttgtttaaccaatgtcttgggagcaatggttagcattctcc 189  Q
    ||| | ||||||| || |||  |  ||||| |||||||||||||||    
T  12094973 tttggatgtttaaacattgttcttcgagcattggttagcattctcc 12094928  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 34236293 - 34236177
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaatt-ttacttgtt 144  Q
    ||||||||| | ||||||||||  |||||| |||||||||||| | | ||  |||||||| | || ||||||||| ||||||| ||||   |||||||||    
T  34236293 gttaaagaaactataaataaaaaatttgtcctgaaaatataagtt-taacttttgattaagtgataattacactattttttataaaaaaaattacttgtt 34236195  T
Q  145 ttagttgtttaaccaatg 162  Q
    || |||||||||||||||    
T  34236194 ttggttgtttaaccaatg 34236177  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 36752713 - 36752762
Alignment:
Q  107 taatgattacactactttttattaaaattttacttgttttagttgtttaa 156  Q
    |||| ||||||| | |||||||||||| ||||||||||||||||||||||    
T  36752713 taataattacacaattttttattaaaaatttacttgttttagttgtttaa 36752762  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 31241951 - 31242045
Alignment:
Q  46 gttaaagaatccataaataaaagttt-tgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaattttac 139  Q
    ||||| ||||| ||||||| || ||| |||||||||||||||| |  ||||  || |||||||||| |||||| ||||||||| ||||| |||||    
T  31241951 gttaaggaatctataaatagaattttctgtcttgaaaatataaacggtcactttttattaaataataattacattactttttaataaaaatttac 31242045  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 19480749 - 19480708
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataa 87  Q
    ||||||||||  |||||||||| |||||||||||||||||||    
T  19480749 gttaaagaatttataaataaaaattttgtcttgaaaatataa 19480708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 43556694 - 43556645
Alignment:
Q  38 gagtattagttaaagaatccataaataaaagttttgtcttgaaaatataa 87  Q
    |||||||||||||  ||| ||||||||||| ||||||||| |||||||||    
T  43556694 gagtattagttaagaaattcataaataaaatttttgtcttaaaaatataa 43556645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 51100026 - 51100143
Alignment:
Q  46 gttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactacttttt-attaaaattttacttgtt 144  Q
    ||||| ||||| ||||||| ||  ||| | ||||||||||||| | | ||  |||||||| |||| ||||||||||||||| || ||||  |||||||||    
T  51100026 gttaaggaatctataaatagaaaatttattttgaaaatataagttttaacttttgattaagtaataattacactactttttaataaaaaagttacttgtt 51100125  T
Q  145 ttagttgtttaaccaatg 162  Q
    ||  ||||||||| ||||    
T  51100126 ttgattgtttaacaaatg 51100143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 5645700 - 5645751
Alignment:
Q  98 ttgattaaataatgattacactactttttattaaaattttacttgttttagtt 150  Q
    ||||||||||||| |||||||||||||||| |||||  ||| |||||||||||    
T  5645700 ttgattaaataataattacactacttttta-taaaaagttatttgttttagtt 5645751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 31861680 - 31861624
Alignment:
Q  32 tcctaagagtattagttaaagaatccataaataaaagttttgtcttgaaaatataag 88  Q
    |||||||||||||  |||| ||||||||||| | || || |||||||||||||||||    
T  31861680 tcctaagagtattgtttaaggaatccataaaaagaaattatgtcttgaaaatataag 31861624  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 36644 - 36558
Alignment:
Q  47 ttaaagaatccataaataaaagttttgtcttgaaaatataagctatcacacttgattaaataatgattacactactttttattaaaa 133  Q
    ||||||||||   |||||||| |||||| ||||||||||||| | | ||  |||||||||||||||||| || ||||||| ||||||    
T  36644 ttaaagaatcttcaaataaaaattttgttttgaaaatataagatgttacttttgattaaataatgattatacaacttttttttaaaa 36558  T

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Target: scaffold0329 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 7448 - 7400
Alignment:
Q  70 tttgtcttgaaaatataagctatcacacttgattaaataatgattacac 118  Q
    ||||||||||||||||||| ||| ||  ||||| |||||||||||||||    
T  7448 tttgtcttgaaaatataagatattacttttgatcaaataatgattacac 7400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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