View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10451_low_28 (Length: 240)
Name: NF10451_low_28
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10451_low_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 26792846 - 26792624
Alignment:
| Q |
18 |
aaaatagtaattatatataagagaggtgcttcactgagatgatttgcattgaaaattcatttcctagttactaggtggagatggaaagacaatgaaaaaa |
117 |
Q |
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| T |
26792846 |
aaaatagtaattatatataagagaggtgcttcactgagatgatctgcattgaaaattcatctcctagttactaggtggagatggaaagacaatgaaaaaa |
26792747 |
T |
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| Q |
118 |
caaggtttgatataggaaatctaaaaatgtaaagatcttatatgttaacaactcaatgctgtaaattttcaatataaaaacgaaaaagctaatctaaata |
217 |
Q |
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| T |
26792746 |
caaggtttgatataggaaatctaaaaatgtaaagatcttatatgttaacaacttaatgctgtaaattttcaatataaaaacgaaaaagttaatctaaata |
26792647 |
T |
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| Q |
218 |
gacaaattctattggtttaactc |
240 |
Q |
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| T |
26792646 |
gacaaattctattggtttaactc |
26792624 |
T |
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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 1465124 - 1465022
Alignment:
| Q |
97 |
gatggaaagacaatgaaaaaacaaggtttgatataggaaatctaaaaatgtaaagatcttatatgttaacaactcaatgctgtaaattttcaatataaaa |
196 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| || || | |||||||||||||||| |
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| T |
1465124 |
gatggaaagaca-tgaaaaaacaaggtttgatatagaaaatct-aaaatgtaaagatct--tatgttaacaacttgatcctattaattttcaatataaaa |
1465029 |
T |
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| Q |
197 |
acgaaaa |
203 |
Q |
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| T |
1465028 |
acgaaaa |
1465022 |
T |
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