View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10451_low_6 (Length: 430)

Name: NF10451_low_6
Description: NF10451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10451_low_6
NF10451_low_6
[»] chr5 (1 HSPs)
chr5 (1-415)||(39252497-39252901)
[»] chr1 (3 HSPs)
chr1 (269-322)||(35201495-35201548)
chr1 (269-322)||(35202375-35202428)
chr1 (269-317)||(37643843-37643891)
[»] chr3 (2 HSPs)
chr3 (266-320)||(47007765-47007819)
chr3 (269-320)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (267-311)||(29308399-29308443)
chr2 (267-311)||(29309102-29309146)
chr2 (267-322)||(4161336-4161390)
chr2 (267-311)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (269-322)||(33520893-33520946)
chr8 (269-311)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (267-322)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (269-311)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 39252901 - 39252497
Alignment:
Q  1 tcaaagtgtgattgtctgcgttgtggaatttcaagatgcattcctataactcctctggtaaactctggtaaatatgaacatgcttctgccatcattcttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252901 tcaaagtgtgattgtctgcgttgtggaatttcaagatgcattcccataactcctctggtaaactctggtaaatatgaacatgcttctgccatcattcttg 39252802  T
Q  101 tttgaaaattcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttctctcaattcattcactcactttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252801 tttgaaaattcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttctctcaattcattcactcactttcat 39252702  T
Q  201 tatatagacgcccctaaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagatcctctccatttagggaggaaatgg 300  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39252701 tata----------taaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagatcctctccattttgggaggaaatgg 39252612  T
Q  301 ccatctcaattacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctctaataataatactccctcataatct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39252611 ccatctcaattacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctctaatagtaatactccctcataatct 39252512  T
Q  401 gactttcacgtgatg 415  Q
    |||||||||||||||    
T  39252511 gactttcacgtgatg 39252497  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 35201495 - 35201548
Alignment:
Q  269 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 322  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  35201495 gtgcagatcctctccatttggggagtaaatggccatctcaatttcctttcataa 35201548  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 35202428 - 35202375
Alignment:
Q  269 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 322  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  35202428 gtgcagatcctctccatttggtgaggaaatggccatctcaatttcctttcataa 35202375  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 37643891 - 37643843
Alignment:
Q  269 gtgcagatcctctccatttagggaggaaatggccatctcaattaccttt 317  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||    
T  37643891 gtgcatatcctctccatttagggagaaaatgacaatctcaatttccttt 37643843  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 47007819 - 47007765
Alignment:
Q  266 tgagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 320  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007819 tgagtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007765  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 47007023 - 47007074
Alignment:
Q  269 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 320  Q
    |||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007023 gtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007074  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 29308443 - 29308399
Alignment:
Q  267 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 311  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29308443 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29308399  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 29309102 - 29309146
Alignment:
Q  267 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 311  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29309102 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29309146  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 4161390 - 4161336
Alignment:
Q  267 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 322  Q
    ||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||    
T  4161390 gagtgcagatcctctccatttgggga-gaaattgcaatctcaatttcctttcataa 4161336  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 29283954 - 29283910
Alignment:
Q  267 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 311  Q
    ||||| |||||||||||||||||||||||||| || |||| ||||    
T  29283954 gagtgtagatcctctccatttagggaggaaattgcaatctaaatt 29283910  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 33520946 - 33520893
Alignment:
Q  269 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 322  Q
    ||||||||||||||||||| | ||||||||||||||| ||||| ||||| ||||    
T  33520946 gtgcagatcctctccatttggtgaggaaatggccatcacaatttcctttaataa 33520893  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 33520216 - 33520258
Alignment:
Q  269 gtgcagatcctctccatttagggaggaaatggccatctcaatt 311  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  33520216 gtgcagatcctctccattttatgaggaaatggccatctcaatt 33520258  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 4275070 - 4275125
Alignment:
Q  267 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 322  Q
    |||| ||||||||||||||||||| || ||||||| ||||||||| || |||||||    
T  4275070 gagtacagatcctctccatttaggtagaaaatggcaatctcaatttccattcataa 4275125  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 1625 - 1667
Alignment:
Q  269 gtgcagatcctctccatttagggaggaaatggccatctcaatt 311  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  1625 gtgcagatcctctccattttatgaggaaatggccatctcaatt 1667  T

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