View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10452_high_3 (Length: 288)
Name: NF10452_high_3
Description: NF10452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10452_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 22110943 - 22110679
Alignment:
| Q |
16 |
gaaactactgtcaagtgcgccgtttttccctacacattttccattgtttccagtggtagaaagtatagacgcggctgcctcagctgcttttctccactga |
115 |
Q |
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| T |
22110943 |
gaaactactgtcaagtgcgccgtttttccctacacattttccattgtttccagtggtagaaagtatagacgcggctgcctcagctgcttttctccactga |
22110844 |
T |
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| Q |
116 |
tcagactgaactttcaatctccttaattcggcttccagctctgaattcgcagcctgagcagcatctagctgttcagttacacgagccactcttctgttac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22110843 |
tcagactgaactttcaatctccttaattcggcttccagctctgaattcgcagcctgagcagcatctagctgttcagttacacgagccactcttctgttac |
22110744 |
T |
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| Q |
216 |
ttttatccgcttcttccattacatagctaagtttcgtcaaagcctctttctctgcagcctttgct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22110743 |
ttttatccgcttcttccattacatagctaagtttcgtcaaagcctctttctctgcagcccttgct |
22110679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 40583646 - 40583910
Alignment:
| Q |
16 |
gaaactactgtcaagtgcgccgtttttccctacacattttccattgtttccagtggtagaaagtatagacgcggctgcctcagctgcttttctccactga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40583646 |
gaaactactgtcaagtgcgccgtttttccctacacattttccattgtttccagtggtagaaagtatagacgcggctgcctcagctgcttttctccactga |
40583745 |
T |
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| Q |
116 |
tcagactgaactttcaatctccttaattcggcttccagctctgaattcgcagcctgagcagcatctagctgttcagttacacgagccactcttctgttac |
215 |
Q |
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| T |
40583746 |
tcagactgaactttcaatctccttaattcggcttccagctctgaattcgcagcctgagcagcatctagctgttcagttacacgagccactcttctgttac |
40583845 |
T |
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| Q |
216 |
ttttatccgcttcttccattacatagctaagtttcgtcaaagcctctttctctgcagcctttgct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40583846 |
ttttatccgcttcttccattacatagctaagtttcgtcaaagcctctttctctgcagcccttgct |
40583910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 262
Target Start/End: Complemental strand, 28733940 - 28733767
Alignment:
| Q |
89 |
gctgcctcagctgcttttctccactgatcagactgaactttcaatctccttaattcggcttccagctctgaattcgcagcctgagcagcatctagctgtt |
188 |
Q |
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||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||| || || | ||| |||| | ||||| |||| ||||| || | |
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| T |
28733940 |
gctgcttcagctgctttcctccattgatctgactgtactttcaatctccttaattcagcctctaactccaaatttgacgcctgtgcagtatctaactcct |
28733841 |
T |
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| Q |
189 |
cagttacacgagccactcttctgttacttttatccgcttcttccattacatagctaagtttcgtcaaagcctct |
262 |
Q |
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|||||||||| | | ||| |||||||| ||| |||||||| ||| ||||| ||||| |||||||||||| |
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| T |
28733840 |
cagttacacgtgttatcattcggttactttcatcagcttcttctgttatgtagctgagttttgtcaaagcctct |
28733767 |
T |
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