View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10452_high_4 (Length: 275)
Name: NF10452_high_4
Description: NF10452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10452_high_4 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 10376017 - 10375758
Alignment:
| Q |
1 |
taaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10376017 |
taaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
10375918 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375917 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
10375818 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375817 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
10375758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 9838759 - 9839017
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || |||||||||||||||||||| | | ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838759 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
9838858 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838859 |
cccttgcccaacttgtttacaatgatgaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaac |
9838958 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
9838959 |
caagtctctccttgaatcggtcacttccataacatgggatagcaataatcttgatgtcc |
9839017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 9849637 - 9849895
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || |||||||||||||||||||| | | ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849637 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
9849736 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849737 |
cccttgcccaacttgtttacaatgatgaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaac |
9849836 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
9849837 |
caagtctctccttgaatcggtcacttccataacatgggatagcaataatcttgatgtcc |
9849895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 10126826 - 10127084
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10126826 |
aaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaacta |
10126925 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10126926 |
cccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaac |
10127025 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
10127026 |
aaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttgatgtcc |
10127084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 11769132 - 11769386
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11769132 |
aaagagacaataatgaacatgttgctatcacagagagacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
11769231 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
11769232 |
cccttgctcaacttgtctacaatgataaagaagttcaacaatattttgatttgaaggcatgggcttgcgtgtctgaggattttgatattatgagagtaac |
11769331 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgat |
256 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11769332 |
caggtctctccttgaatcggtcacttcaagaacttgggatagcaataatcttgat |
11769386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 10434215 - 10433957
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||| | ||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10434215 |
aaagagacaataatgaacatgttgctatcacagagaaacacaactcataataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaacta |
10434116 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
10434115 |
cccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcctgggcttgtgtgtctcaggattttgatattttgaaagtaac |
10434016 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
10434015 |
caagtctctccttgaatcggtcacttccagaacttgggatagcaataatcttgatgtcc |
10433957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 10663424 - 10663682
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10663424 |
aaagagacaataatgaacatgttgctatcacagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
10663523 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10663524 |
cccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaac |
10663623 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| ||||||||||| |||||||||||| |
|
|
| T |
10663624 |
aaagtctctccttgaatctgtcacttccacaacttgggatagcaaagatcttgatgtcc |
10663682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 10031901 - 10032159
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10031901 |
aaagagacaataatgaacatgttgctatcacagagagacgcatcccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
10032000 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10032001 |
cccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcctgggcttgtgtgtctgaggattttgatattatgagagtaac |
10032100 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| | ||||||||| |||||||||||| |
|
|
| T |
10032101 |
aaagtctctccttgaatctgtcacttccacaacttcggatagcaaagatcttgatgtcc |
10032159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 10184140 - 10184398
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || ||||||||||||||||| ||| ||| ||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10184140 |
aaagagacaataatgaacatgttgctgtcacagagagacacaacccataatgctataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
10184239 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
10184240 |
cccttgctcaacttgtttacaatgataaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtccgaggattttgatattatgagagtaac |
10184339 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
10184340 |
caagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttgatgtcc |
10184398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 10260596 - 10260849
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||| ||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260596 |
aaagagacaataatgaacatgttgctatcacagagagaaacaaccaacaataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
10260695 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10260696 |
cccttgctcaacttgtttacaatgataaagaagttcaacaacattttgacatgaaggcgtgggcttgtgtgtctgaggattttgatattatgagagtaac |
10260795 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
255 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||||||| |||||||||||| |
|
|
| T |
10260796 |
caagtctctccttgaatcagtcacttctagaaattgggatatcaataatcttga |
10260849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 10580499 - 10580757
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580499 |
aaagagacaataatgaacatgttgctatcacagagaaacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
10580598 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10580599 |
cccttgcccaacttgtttacaatgataaagaagttcaacaacattttgacatgaaggcgtgggtttgtgtgtctgaggattttgatattatgagagtaac |
10580698 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| | ||| ||||||||||||||||||| |
|
|
| T |
10580699 |
aaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtcc |
10580757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 10077167 - 10077425
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || |||||||||||||||||||||| || | | | | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10077167 |
aaagagacaataatgaacatgttgctatcagggatgggcggaacccataataagataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
10077266 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10077267 |
cccttgcccaacttgtttacaatgattataaagttcgataccattttgatttgcaggcatgggcttgtgtgtctgaggattttgatattatgagagtaac |
10077366 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||||| |||| |||||||||||| |
|
|
| T |
10077367 |
caagtctctccttgaatcgatcacttctagaacttgggataacaatgatcttgatgtcc |
10077425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10088687 - 10088946
Alignment:
| Q |
1 |
taaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||| || ||||||||||||||||| ||| ||| ||| ||| | | |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10088687 |
taaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaact |
10088786 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10088787 |
acccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaa |
10088886 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
| ||||||||||||||||| |||||||| | ||| | |||||||||| |||||| ||||| |
|
|
| T |
10088887 |
caaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttggtgtcc |
10088946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10195570 - 10195829
Alignment:
| Q |
1 |
taaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||| || ||||||||||||||||| ||| ||| ||| ||| | | |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10195570 |
taaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaact |
10195669 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10195670 |
acccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaa |
10195769 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
| ||||||||||||||||| |||||||| | ||| | |||||||||| |||||| ||||| |
|
|
| T |
10195770 |
caaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttggtgtcc |
10195829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 10363969 - 10363711
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || ||||||||||||||||| ||| ||| ||| ||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10363969 |
aaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaacta |
10363870 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
10363869 |
cccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtctctgaggattttgatattatgagagtaac |
10363770 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||| | |||||| | ||| | ||| ||||||||||||||||||| |
|
|
| T |
10363769 |
aaagtctctccttgaatctgccacttccataacttcggaaagcaataatcttgatgtcc |
10363711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 11131151 - 11130943
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || ||||||||| | |||||||| |||||||||||| ||| |||||||||||||||||||||| |||| || |
|
|
| T |
11131151 |
ataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaacactt |
11131052 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttcaagaacatgggatagcaat |
247 |
Q |
| |
|
|||| | || |||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||| ||||||||||| | ||||| | |||| |
|
|
| T |
11131051 |
tgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatctgtcacttcaagggcttgggaaaacaat |
11130952 |
T |
|
| Q |
248 |
aatcttgat |
256 |
Q |
| |
|
||||||||| |
|
|
| T |
11130951 |
aatcttgat |
11130943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 11148979 - 11148771
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || ||||||||| | |||||||| |||||||||||| ||| |||||||||||||||||||||| |||| || |
|
|
| T |
11148979 |
ataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaacactt |
11148880 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttcaagaacatgggatagcaat |
247 |
Q |
| |
|
|||| | || |||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||||| ||||||||||| | ||||| | |||| |
|
|
| T |
11148879 |
tgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagtaactaaaactctccttgaatctgtcacttcaagggcttgggaaaacaat |
11148780 |
T |
|
| Q |
248 |
aatcttgat |
256 |
Q |
| |
|
||||||||| |
|
|
| T |
11148779 |
aatcttgat |
11148771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11160189 - 11159934
Alignment:
| Q |
1 |
taaagacactataatgaacatgttgctatcagagacagacacatcgca-taataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
99 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| ||| | ||| ||| |||||||| |||||||||||||| || ||||||||| | || ||||| |
|
|
| T |
11160189 |
taaagagacaataatgaacatgttgctatcagagagtagcac-tggcaataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaac |
11160091 |
T |
|
| Q |
100 |
tacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
199 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||| | ||||||||||| || |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
11160090 |
gacacttgcacaacttgtttacaataatgaaaaagttcaagatcattttgatttcaaagcatgggcttgtgtatctgaggattttgatattttatctgta |
11159991 |
T |
|
| Q |
200 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgat |
256 |
Q |
| |
|
|| || |||| |||||||| |||||||||||| | ||||| | ||||||||||||| |
|
|
| T |
11159990 |
actaaaactcttcttgaatctgtcacttcaagagcttgggaaaccaataatcttgat |
11159934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 10889203 - 10889454
Alignment:
| Q |
1 |
taaagacactataatgaacatgttgctatcagaga-cagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaac |
99 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| ||| ||| | |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| |
|
|
| T |
10889203 |
taaagagacaataatgaacatgttgctatcagagagcag-cactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaac |
10889301 |
T |
|
| Q |
100 |
tacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagta |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| | || |||||| | || |||||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
10889302 |
gacacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaagcatgggcttgtgtatctgaggattttgatattttaactgta |
10889401 |
T |
|
| Q |
200 |
accaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatct |
252 |
Q |
| |
|
|| || |||| |||||||| || ||||||||| | ||||| | ||||||||| |
|
|
| T |
10889402 |
actaaaactcttcttgaatctgtgacttcaagagcttgggaaaacaataatct |
10889454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 8861194 - 8861438
Alignment:
| Q |
12 |
taatgaacatgttgctatcagaga-cagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcac |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| | |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| || ||||||| |
|
|
| T |
8861194 |
taatgaacatgttgctatcagagagcag-cactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcac |
8861292 |
T |
|
| Q |
111 |
aacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| | || |||||| | || |||||||||||||| || |||||||||||||||| | ||||| || |||| |
|
|
| T |
8861293 |
aacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaagcatgggcttgtgtatcagaggattttgatatttcaactgtaactaaaactct |
8861392 |
T |
|
| Q |
211 |
ccttgaatcggtcacttcaagaacatgggatagcaataatcttgat |
256 |
Q |
| |
|
|||||||| |||||||||||| | ||||| | ||||||||||||| |
|
|
| T |
8861393 |
tcttgaatctgtcacttcaagagcttgggaaaacaataatcttgat |
8861438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 10527281 - 10527452
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||||||||| | || ||||| |||||||||||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
10527281 |
ataataatttaggtgttgttgcaatcttgggtatgggaggtgtcggtaaaacaacccttgcacaacttgtttacaatgatgaaaaggttgaacaccattt |
10527380 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||| | ||||| |||| || ||| || |||||||| ||| || |||||||||||||||||||| ||||||| |
|
|
| T |
10527381 |
tgatctcaaggcctgggtttatgtatcagaggatttcgatgttgtgagagtaaccaagtctctcattgaatc |
10527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 10517408 - 10517579
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||| |||||||| | || ||||| ||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10517408 |
ataataatttaggtgttgctgcaattgtgggtatgggaggcgtcggtaaaacgacccttgcacagtttgtttacaatgatgcaaaagttgaacaacattt |
10517507 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||||| || || |||| |||||| ||||||||||||||| || | |||| |||||||||| |||||||||| |
|
|
| T |
10517508 |
tgatttcaaagcctgggtttgtgtatctgaggattttgatgttattagagcaaccaagtctatccttgaatc |
10517579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 11782128 - 11781957
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| | || ||||| ||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
11782128 |
ataataatttaggtgttgtcgcaattttgggtatgggaggcgtcggtaaaacgacccttgcacagcttgtttacaatgatgtgaaagttgaacaacattt |
11782029 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||||| || | |||| |||||| || |||||||| ||| || | ||| |||||||||||||||||||||| |
|
|
| T |
11782028 |
tgatttcaaagtctgggtttgtgtatcggaggatttcgatgttgttagaataaccaagtctctccttgaatc |
11781957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 10500500 - 10500671
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| || || ||| || || ||||||| |
|
|
| T |
10500500 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgacgataaaattgaagaacattt |
10500599 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||||| ||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
10500600 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
10500671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13160935 - 13161077
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13160935 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13161034 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13161035 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13161077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13170986 - 13171128
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13170986 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13171085 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13171086 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13171128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13289620 - 13289762
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13289620 |
ggtgtggtcgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13289719 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
13289720 |
tctgggtttgtgtatcggaggatttcgatattttgagagtaac |
13289762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13332859 - 13333001
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13332859 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13332958 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13332959 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13333001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 13344044 - 13344183
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13344044 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13344143 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagt |
198 |
Q |
| |
|
|||| |||||| || |||||||| |||||| ||||||| |
|
|
| T |
13344144 |
tctgggtttgtgtatcggaggatttcgatattctgagagt |
13344183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 26906795 - 26907053
Alignment:
| Q |
2 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || |||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26906795 |
aaagagacaataatgaatatgttgctatcagagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
26906894 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||| ||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26906895 |
cccttgcccaacttctttacaatgataaagaagttcaacggcattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaac |
26906994 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
26906995 |
caaatctctccttgaatcggtcacttccagaacttgggataccaataatcttgatgtcc |
26907053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 17853069 - 17852898
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| ||||||||| | || ||||| ||||||||||| |||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
17853069 |
ataacaatttaggtgttgttgcaatattggggatgggaggtgtcggtaaaacgacccttgcacagcttgtttacaatgatgaaaaggttgaacatcattt |
17852970 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||| | || || |||| |||||| || || ||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
17852969 |
tgatctcaaagcctgggtttgtgtatcagaagattttgatgttgtgagagtaaccaagtctctccttgaatc |
17852898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 7129044 - 7128961
Alignment:
| Q |
104 |
cttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgat |
187 |
Q |
| |
|
||||| |||||||| |||||||| || |||| |||||||||||||| ||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
7129044 |
cttgctcaacttgtatacaatgacaaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgatgattttgat |
7128961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 11484961 - 11485132
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| | || ||||| ||||||||||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
11484961 |
ataataatttaggtgttgttgcaattttggttatgggaggcgtcggtaaaacgacccttgcacaacttgtttacaacgatgaaaaagttgaacagcattt |
11485060 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||| | || ||||||| |||||| || |||||||| ||| | |||| |||||||||| ||||||||||| |
|
|
| T |
11485061 |
tgatctcaaagcatgggtttgtgtatcggaggatttcgatgtcgtgaggataaccaagtccctccttgaatc |
11485132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 44957834 - 44957664
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||||||| ||||||||||||| | || || ||||||||| | || ||||| || || ||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
44957834 |
ataataatttaggtgttgttgccaccttaggtatgggaggtgtcggtaaaacgactctcgcacaacttgtttacaatgatataaaagttgaacaacattt |
44957735 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaat |
218 |
Q |
| |
|
||| | || |||||| ||||| || |||||||| || || | ||| |||| |||||||| ||||||| |
|
|
| T |
44957734 |
cgatctcaaagcatggatatgtgtatcagaggatttcaatgttgttagaataacaaagtctcttcttgaat |
44957664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 29836587 - 29836795
Alignment:
| Q |
48 |
ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||||| | || ||||| ||||| || | |||| | ||||| | ||| ||||| || | ||||| |
|
|
| T |
29836587 |
ataataatataggtgtagtcgcaattacaggcatgggaggtatcggtaaaacgaccctcgctcgacttatatacaaccaggaagaagttaaaaatcattt |
29836686 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttcaagaacatgggatagcaat |
247 |
Q |
| |
|
|||| | | | |||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||| ||| |||| |
|
|
| T |
29836687 |
tgatgtacaagtctgggtttgtgtgtctgaagattttgatatgttgagagtaaccaaatctctccttgaagttgtcacttcaagagaatggaataccaat |
29836786 |
T |
|
| Q |
248 |
aatcttgat |
256 |
Q |
| |
|
|| |||||| |
|
|
| T |
29836787 |
aaccttgat |
29836795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 136002 - 135860
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
136002 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
135903 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
135902 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
135860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 146053 - 145911
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
146053 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
145954 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
145953 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
145911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 31679845 - 31679703
Alignment:
| Q |
61 |
tgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggca |
160 |
Q |
| |
|
||||||| ||||||| |||||||||||| | || ||||| |||| || |||||| ||||||||||| || | |||||| ||| ||||||| | || || |
|
|
| T |
31679845 |
tgttgtttcaattttcggcatgggaggtgtcggtaaaacagccctagctcaacttctttacaatgataaagatgttcaagaacgttttgatgtaaaagct |
31679746 |
T |
|
| Q |
161 |
tgggcttgtgtgtctgaggattttgatattttgagagtaacca |
203 |
Q |
| |
|
|||| |||| |||| || || |||||| ||||||| ||||||| |
|
|
| T |
31679745 |
tgggtttgtctgtccgaagagtttgatgttttgagggtaacca |
31679703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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