View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10452_high_7 (Length: 229)

Name: NF10452_high_7
Description: NF10452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10452_high_7
NF10452_high_7
[»] chr3 (6 HSPs)
chr3 (7-229)||(6163231-6163453)
chr3 (8-227)||(6135425-6135644)
chr3 (11-227)||(6138149-6138365)
chr3 (11-227)||(13284049-13284265)
chr3 (7-85)||(6132336-6132418)
chr3 (8-69)||(6232759-6232820)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 6163231 - 6163453
Alignment:
Q  7 tggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgattaccaatattggtttaaagcaagcatttccaatgagg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6163231 tggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgattaccaatattggtttaaagcaagcatttccaatgagg 6163330  T
Q  107 aaatctaagtgggttttaggaacttgacgtgacaaatgaatattataaaaattgtagaaataacttaaataaggaatggaatcaccattgatgtttgggt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6163331 aaatctaagtgggttttaggaacttgacgtgacaaatgaatattataaaaattgtagaaataacttaaataaggaatggaatcaccattgatgtttgggt 6163430  T
Q  207 ccataatatcatatcatgtcacc 229  Q
    |||||||||||||||||||||||    
T  6163431 ccataatatcatatcatgtcacc 6163453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 6135425 - 6135644
Alignment:
Q  8 ggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgattaccaatattggtttaaagcaagcatttccaatgagga 107  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| |||||||||||||||||||| || |||||| | ||    
T  6135425 ggggtcccagatacttggaatgagattctctatgcatcaatcataaattagaattaagtgattatcaatattggtttaaagcaagaatctccaataaaga 6135524  T
Q  108 aatctaagtgggttttaggaacttgacgtgacaaatgaatattataaaaattgtagaaataacttaaataaggaatggaatcaccattgatgtttgggtc 207  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6135525 aatctaagtgggttttaagaacttgaggtgacaaatgaatattataaaaattgtagaaataacttaaataaggaatggaatcaccattgatgtttgggtc 6135624  T
Q  208 cataatatcatatcatgtca 227  Q
    ||||||||||||||||||||    
T  6135625 cataatatcatatcatgtca 6135644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 6138149 - 6138365
Alignment:
Q  11 gtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgattaccaatattggtttaaagcaagcatttccaatgaggaaat 110  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||| | ||||||||||||    
T  6138149 gtcccagatacttggaatgagattctgtatgcatcaatcacgaattagaattaagtgattatcaatattggtttaaagtaagcatctacaatgaggaaat 6138248  T
Q  111 ctaagtgggttttaggaacttgacgtgacaaatgaatattataaaaattgtagaaataacttaaataaggaatggaatcaccattgatgtttgggtccat 210  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||    
T  6138249 ctaagtgggttttaggaacttgacgtgacaaatggatatcataaaaattgtagaaataacttaaataatgaatggaatcatcattaatgtttggatccat 6138348  T
Q  211 aatatcatatcatgtca 227  Q
    |||| | ||| ||||||    
T  6138349 aataacgtattatgtca 6138365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 13284265 - 13284049
Alignment:
Q  11 gtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgattaccaatattggtttaaagcaagcatttccaatgaggaaat 110  Q
    |||||||||||||||||||||||| | ||||||||||||| |||||  ||||||||||||| |||||||||||||||| |||||| | ||||||||||||    
T  13284265 gtcccagatacttggaatgagattctttatgcatcaatcacgaattaaaattaagtgattatcaatattggtttaaagtaagcatctacaatgaggaaat 13284166  T
Q  111 ctaagtgggttttaggaacttgacgtgacaaatgaatattataaaaattgtagaaataacttaaataaggaatggaatcaccattgatgtttgggtccat 210  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||    
T  13284165 ctaagtgggttttaggaacttgacgtgacaaatggatataataaaaattgtagaaataacttaaataaagaatggaatcatcattaatgtttggatccat 13284066  T
Q  211 aatatcatatcatgtca 227  Q
    |||| | ||| ||||||    
T  13284065 aataacgtattatgtca 13284049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 6132336 - 6132418
Alignment:
Q  7 tggggtcccagatacttggaatgagattatgtatgcatcaatca-tg---aatttgaattaagtgattaccaatattggttta 85  Q
    |||||| |||||||||||||||||| || ||||||||||||||| ||   |||| |||||| ||||||| |||||||||||||    
T  6132336 tggggtaccagatacttggaatgagcttttgtatgcatcaatcagtgaataattagaattatgtgattagcaatattggttta 6132418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 6232759 - 6232820
Alignment:
Q  8 ggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgat 69  Q
    |||||| ||||||| |||||||||||| ||||| | |||||||||| || ||||||| ||||    
T  6232759 ggggtctcagatacctggaatgagattctgtatccgtcaatcatgagttggaattaattgat 6232820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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