View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10452_low_1 (Length: 537)
Name: NF10452_low_1
Description: NF10452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10452_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 212 - 528
Target Start/End: Complemental strand, 37067289 - 37066973
Alignment:
| Q |
212 |
gagtaagaacacgtaccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgatgaaaagcacgtaaacaacgacaaaaaggtgatg |
311 |
Q |
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| T |
37067289 |
gagtaagagcacgtaccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgataaatagcacgtaaacaatgacaaaaaggtgatg |
37067190 |
T |
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| Q |
312 |
tgaataccaaaatgcattaaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccatggttgggctaaaatgaaagctaca |
411 |
Q |
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| T |
37067189 |
tgaataccaaaatgcattgaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccaaggttgtgctaaaatgaaagctata |
37067090 |
T |
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| Q |
412 |
gccataagcacaaccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgg |
511 |
Q |
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| T |
37067089 |
gccataagcacaaccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgg |
37066990 |
T |
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| Q |
512 |
gttcatattcttcatct |
528 |
Q |
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| T |
37066989 |
gttcatattcttcatct |
37066973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 37067480 - 37067360
Alignment:
| Q |
18 |
acctttagtatcctcacagatttgtagccagatctaaatgcacgaagtagtctttcgcatccgtatagtatcattggaaccgcaagatacatccatgtct |
117 |
Q |
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| T |
37067480 |
acctttagtatcctcacagatttgtagccagatctaaatgcacgaagtagtctttcgcatccgtatagtatcattggaaccgcaagatacatccatgtct |
37067381 |
T |
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| Q |
118 |
atatatgtcacataattttgt |
138 |
Q |
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| T |
37067380 |
atatatgtcacataattttgt |
37067360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 225 - 521
Target Start/End: Original strand, 46561636 - 46561932
Alignment:
| Q |
225 |
taccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgatgaaaagcacgtaaacaacgacaaaaaggtgatgtgaataccaaaat |
324 |
Q |
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| T |
46561636 |
taccgttttcttgtaccatttcttggagaggtataagaagtatccatggacaataagaagagcataaacaatgacaaagaggtgatgtgaataccaaaaa |
46561735 |
T |
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| Q |
325 |
gcattaaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccatggttgggctaaaatgaaagctacagccataagcacaa |
424 |
Q |
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| T |
46561736 |
gcattgaaaccagtgagcttcttcaaaagtggagggagcttaagcttgtttcttcggaaccaaggttgggccaaagtaaaagctatagccataagcacta |
46561835 |
T |
|
| Q |
425 |
ccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgggttcatattc |
521 |
Q |
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| T |
46561836 |
ccatgactatcccagtccaaccctctgtaccttttacaaaccaccaataattgttgggcctatgatcaccaaaaaatttcttcatgggaacatattc |
46561932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 46561460 - 46561539
Alignment:
| Q |
38 |
tttgtagccagatctaaatgcacgaagtagtctttcgcatccgtatagtatcattggaaccgcaagatacatccatgtct |
117 |
Q |
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| T |
46561460 |
tttgtagccagacctaaaagcacgaagtagtcgctcacatgcgtatattatcataggaatggcaagatacatccaagtct |
46561539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 39983149 - 39983097
Alignment:
| Q |
304 |
aggtgatgtgaataccaaaatgcattaaaaccagtgagtttcttgaggggttt |
356 |
Q |
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| T |
39983149 |
aggtgatgagaataccaaaaggcattgaaacctgtgagtttgttgaagggttt |
39983097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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