View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10452_low_11 (Length: 245)
Name: NF10452_low_11
Description: NF10452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10452_low_11 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 32590649 - 32590407
Alignment:
| Q |
1 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaatatgataactcaca |
100 |
Q |
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| T |
32590649 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaatatgataattcaca |
32590550 |
T |
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| Q |
101 |
ttccaacattatacaatgtcactttttgcgtaataattgagtcatgaaagaaaagaaaaaatcaattattttcttcattttcctatattatgaccaacta |
200 |
Q |
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| T |
32590549 |
ttctcacattatacgatgtctctttttgcataataattgaatcatgaaagaaaag--aaaaccaattattttcttcattttcctatattatgaccaacta |
32590452 |
T |
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| Q |
201 |
actttattcctccctaggatgacttctataatagatgtaaacgat |
245 |
Q |
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| T |
32590451 |
actttattcctccctaggatgacttctataatagatgtaaacgat |
32590407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32601120 - 32601022
Alignment:
| Q |
1 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaatatgataactcac |
99 |
Q |
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| T |
32601120 |
aagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaatatgataactcac |
32601022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 32600946 - 32600859
Alignment:
| Q |
156 |
aaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcc-tccc-taggatgacttctataatagatgtaaa |
241 |
Q |
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| T |
32600946 |
aaaaaatcaattattttcttcattttcttatattatgaccaactaactttattccatcccttagcatgacttctataatagatgtaaa |
32600859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
24 |
agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
78 |
Q |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 34594168 - 34594091
Alignment:
| Q |
1 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
78 |
Q |
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| T |
34594168 |
aagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt |
34594091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34578468 - 34578398
Alignment:
| Q |
1 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattgg |
71 |
Q |
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| T |
34578468 |
aagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattgg |
34578398 |
T |
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