View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10452_low_12 (Length: 240)
Name: NF10452_low_12
Description: NF10452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10452_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 2063702 - 2063540
Alignment:
| Q |
61 |
catccaatacatttataagtaacttttcattttttagattagttaaataatagatgtatctgaatggataaatcaataataatgtaatgctagtaccaca |
160 |
Q |
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| T |
2063702 |
catccaatacatttataagtaacttttcattttttaaattagttaaataatcgatgtatctgaacggataaattaatatttgtgtaatgctagtaccaca |
2063603 |
T |
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| Q |
161 |
taatatttgtgtaatgccaccaaatgagtttttgttcgtttaactcaaaatgttactgctact |
223 |
Q |
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| T |
2063602 |
taatatttgtgtaatgccaccaaatgagtttttgtttgttaaactcaaaatgttattgctact |
2063540 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 6167891 - 6167944
Alignment:
| Q |
71 |
atttataagtaacttttcattttttagattagttaaataatagatgtatctgaa |
124 |
Q |
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| T |
6167891 |
atttataagtaattttttcttttttagattaattaaataagagatgtatctgaa |
6167944 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 24265604 - 24265550
Alignment:
| Q |
71 |
atttataagtaacttttcattttttagattagttaaataatagatgtatctgaat |
125 |
Q |
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||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
24265604 |
atttataagcaactttttcttttttagatttattaaataattgatgtatctgaat |
24265550 |
T |
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