View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10452_low_3 (Length: 423)
Name: NF10452_low_3
Description: NF10452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10452_low_3 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 348145 - 347945
Alignment:
| Q |
1 |
aaatggcctatatagcactcttagttttatatatgcaaataaaaatgattagaatagcaaacaactaagaataaagttttttatactaatagttgatcat |
100 |
Q |
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| T |
348145 |
aaatggcctatatagcactcttagttttatatatgcaaataaaaatgattagaatagcaaacaactaagaataaagttttttatactaatagttgatcat |
348046 |
T |
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| Q |
101 |
gcaccaaaactatttaaggttttttaaatagtcccatgatgtattaatcatgcaacatgcataaagtcaaattaatggagagttatttcgtaacctatat |
200 |
Q |
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| T |
348045 |
gcaccaaaactatttaaggttttttaaatagtcccatgatgtattaatcatgcaacatgcataaagtcaaattaatggagagttaattcgtaacttatat |
347946 |
T |
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| Q |
201 |
g |
201 |
Q |
| |
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| |
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| T |
347945 |
g |
347945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 120 - 254
Target Start/End: Original strand, 39071474 - 39071608
Alignment:
| Q |
120 |
ttttttaaatagtcccatgatgtattaatcatgcaacatgcataaagtcaaattaatggagagttatttcgtaacctatatgggaaatgaaaat-taaaa |
218 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||||||| |||| |
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| T |
39071474 |
tttttttaataggcccatgatgtattaatcatgcaacatgcataaagtcaaatcaat-gagagttaattcgtaacctatatggtaaatgaaaatgaaaaa |
39071572 |
T |
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| Q |
219 |
atggcatttaaaagaaacatgcattagagcaagtgt |
254 |
Q |
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| T |
39071573 |
atggaatgtaaaagaagcatggattagagcaagtgt |
39071608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 43505794 - 43505928
Alignment:
| Q |
120 |
ttttttaaatagtcccatgatgtattaatcatgcaacatgcataaag---tcaaattaatggagagttatttcgtaacctatatgggaaatgaaaattaa |
216 |
Q |
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| T |
43505794 |
tttttttaataggtccatgaagtattaatcatgcaacatgcataaagaagtcaaatcaatggagagttaattcgtaacctatatgggaaatgaaaatgaa |
43505893 |
T |
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| Q |
217 |
aaatggcatttaaaagaaacatgcattagagcaag |
251 |
Q |
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| T |
43505894 |
aaatggaatgtaaaacaagcatgtattagagcaag |
43505928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39071363 - 39071418
Alignment:
| Q |
1 |
aaatggcctatatagcactcttagttttatatatgcaaataaaaatgattagaata |
56 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39071363 |
aaatggcctgtatagcactcttagttttttatatgcaaataaaaatgattagaata |
39071418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43505654 - 43505709
Alignment:
| Q |
1 |
aaatggcctatatagcactcttagttttatatatgcaaataaaaatgattagaata |
56 |
Q |
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| T |
43505654 |
aaatggcctgtatagcactcttagttttttatatgcaaataaaaatgattagaata |
43505709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 14756047 - 14756003
Alignment:
| Q |
134 |
ccatgatgtattaatcatgcaacatgcataaagtcaaattaatgg |
178 |
Q |
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| T |
14756047 |
ccatgatgtattaattatgcaatatgcataaagtcaaattaatgg |
14756003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 121 - 254
Target Start/End: Complemental strand, 49765 - 49629
Alignment:
| Q |
121 |
tttttaaatagtcccatgatgtattaatcatgcaacatgcataaagtcaaattaatggagagttatttcgtaacctat----atgggaaatgaaaattaa |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | | |||||||||| || |
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| T |
49765 |
tttttaaatagacccatgatgtattaatcatgcaacatgcataaagtcaaattaatggagagttaattcgtaacttatgggaaatgaaaatgaaaatgaa |
49666 |
T |
|
| Q |
217 |
aaatggcatttaaaagaaacatgcattagagcaagtgt |
254 |
Q |
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||||||||| |||| ||||||| |||||||||||||| |
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| T |
49665 |
aaatggcatgcaaaa-aaacatgtattagagcaagtgt |
49629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 42124491 - 42124355
Alignment:
| Q |
123 |
tttaaatagtcccatgatgtattaatcatgcaacatgcataaagtcaaattaatggagagttatttcgtaacctatatgggaaatgaaaattaaaaa-tg |
221 |
Q |
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||||||||| | |||| |||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||| ||||| || |
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| T |
42124491 |
tttaaatagactcatggtgtattaatcataaaacatgcataaagtgaaattaatggagagttgtttcgtaacttatatgggtaatgaaaatgaaaaactg |
42124392 |
T |
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| Q |
222 |
gcattta----aaagaaacatgcattagagcaagtgt |
254 |
Q |
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|||| || |||||||||||||| ||||||||||| |
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| T |
42124391 |
gcatgtaaattaaagaaacatgcatcagagcaagtgt |
42124355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 17580579 - 17580629
Alignment:
| Q |
134 |
ccatgatgtattaatcatgcaacatgcataaagtcaaattaatggagagtt |
184 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||| ||||| |
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| T |
17580579 |
ccatgatgtattaattatgcaatatgcataaagtcaaattaatggggagtt |
17580629 |
T |
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