View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10452_low_9 (Length: 256)
Name: NF10452_low_9
Description: NF10452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10452_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 17442858 - 17443101
Alignment:
| Q |
1 |
tgctatggattttcctttgtgtttgacttgtaaagctgtttctaatgcttcctcttgtctcaaaagtcttctttgctcttgagcttgaagagcatttata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17442858 |
tgctatggattttcctttgtgtttgacttgtaaagctgtttctgatgcttcctcttgtctcaaaagtcttctctgctcttgagcttgaagagcatttata |
17442957 |
T |
|
| Q |
101 |
tgctctgttaaggttatcttggaaagatcttttgattcttcaagtgcataaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442958 |
agctctgttaaggttatcttggaaagatcttttgattcttcaagtgcagaaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaa |
17443057 |
T |
|
| Q |
201 |
ttctgctatcaagaaattgttctcccaacaatctgatttgattc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443058 |
ttctgctatcaagaaattgttctcccaacaatctgatttgattc |
17443101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 3059342 - 3059099
Alignment:
| Q |
1 |
tgctatggattttcctttgtgtttgacttgtaaagctgtttctaatgcttcctcttgtctcaaaagtcttctttgctcttgagcttgaagagcatttata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3059342 |
tgctatggattttcctttgtgtttgacttgtaaagctgtttctgatgcttcctcttgtctcaaaagtcttctctgctcttgagcttgaagagcatttata |
3059243 |
T |
|
| Q |
101 |
tgctctgttaaggttatcttggaaagatcttttgattcttcaagtgcataaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059242 |
agctctgttaaggttatcttggaaagatcttttgattcttcaagtgcaaaaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaa |
3059143 |
T |
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| Q |
201 |
ttctgctatcaagaaattgttctcccaacaatctgatttgattc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3059142 |
ttctgctatcaagaaattgttctcccaacaatctaatttgattc |
3059099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4873985 - 4873742
Alignment:
| Q |
1 |
tgctatggattttcctttgtgtttgacttgtaaagctgtttctaatgcttcctcttgtctcaaaagtcttctttgctcttgagcttgaagagcatttata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
4873985 |
tgctatggattttcctttgtgtttgacttgtaaagctgtttctgatgcttcctcttgtctcaaaattcttctctgctcttgagcttgaagagcatttata |
4873886 |
T |
|
| Q |
101 |
tgctctgttaaggttatcttggaaagatcttttgattcttcaagtgcataaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873885 |
agctctgttaaggttatcttggaaagatcttttgattcttcaagtgcagaaatctttgattcgaatctttcaggtaaaaccaccaagactttttctacaa |
4873786 |
T |
|
| Q |
201 |
ttctgctatcaagaaattgttctcccaacaatctgatttgattc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
4873785 |
ttctgctatcaagaaattgttctcccaacaatcttatttgattc |
4873742 |
T |
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