View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10453_low_1 (Length: 455)

Name: NF10453_low_1
Description: NF10453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10453_low_1
NF10453_low_1
[»] chr1 (31 HSPs)
chr1 (18-443)||(48063819-48064236)
chr1 (88-334)||(48101173-48101419)
chr1 (96-334)||(48068576-48068814)
chr1 (88-335)||(48107588-48107835)
chr1 (26-69)||(4920901-4920944)
chr1 (25-76)||(1725245-1725296)
chr1 (18-65)||(27820483-27820529)
chr1 (18-68)||(7472551-7472601)
chr1 (27-73)||(10082517-10082563)
chr1 (19-65)||(10280522-10280568)
chr1 (27-65)||(34619514-34619552)
chr1 (25-73)||(2194478-2194525)
chr1 (25-65)||(31517887-31517927)
chr1 (18-62)||(37593812-37593856)
chr1 (18-65)||(10744188-10744235)
chr1 (30-65)||(11218100-11218135)
chr1 (44-79)||(11560695-11560730)
chr1 (18-65)||(35058899-35058946)
chr1 (34-65)||(35925585-35925616)
chr1 (18-57)||(37841886-37841925)
chr1 (31-74)||(38219816-38219859)
chr1 (36-78)||(9236977-9237019)
chr1 (19-65)||(33527275-33527321)
chr1 (19-65)||(34404932-34404978)
chr1 (19-65)||(36070146-36070192)
chr1 (19-73)||(37617556-37617609)
chr1 (33-70)||(1510100-1510137)
chr1 (19-68)||(46423148-46423196)
chr1 (18-74)||(4576660-4576716)
chr1 (19-63)||(27970417-27970460)
chr1 (26-58)||(29128434-29128466)
[»] chr5 (29 HSPs)
chr5 (26-75)||(8089669-8089718)
chr5 (26-73)||(10772029-10772076)
chr5 (18-65)||(30291141-30291188)
chr5 (18-73)||(41819484-41819539)
chr5 (27-65)||(6593180-6593218)
chr5 (28-70)||(29845050-29845092)
chr5 (26-68)||(40731171-40731213)
chr5 (18-67)||(32372493-32372541)
chr5 (25-70)||(32927972-32928017)
chr5 (25-70)||(38105013-38105058)
chr5 (33-65)||(5559610-5559642)
chr5 (25-73)||(32849082-32849130)
chr5 (34-65)||(11715018-11715049)
chr5 (18-65)||(28776856-28776902)
chr5 (18-65)||(42573922-42573969)
chr5 (25-71)||(3520296-3520341)
chr5 (25-59)||(11706742-11706776)
chr5 (27-65)||(14675052-14675090)
chr5 (20-70)||(26796338-26796388)
chr5 (20-70)||(26799856-26799906)
chr5 (20-70)||(26807406-26807456)
chr5 (33-71)||(34368662-34368700)
chr5 (19-65)||(37914650-37914696)
chr5 (27-56)||(5390203-5390232)
chr5 (26-59)||(8089024-8089057)
chr5 (25-61)||(5963432-5963468)
chr5 (33-65)||(12467070-12467102)
chr5 (25-65)||(13697919-13697958)
chr5 (43-75)||(14955594-14955626)
[»] chr4 (28 HSPs)
chr4 (18-71)||(50298405-50298458)
chr4 (17-71)||(26883869-26883923)
chr4 (28-65)||(54214895-54214932)
chr4 (20-72)||(45214251-45214303)
chr4 (19-70)||(20936358-20936409)
chr4 (26-68)||(2987066-2987108)
chr4 (18-68)||(10206042-10206092)
chr4 (26-72)||(17823012-17823058)
chr4 (19-65)||(30066910-30066956)
chr4 (18-68)||(39886716-39886766)
chr4 (33-70)||(19039656-19039693)
chr4 (25-70)||(47399409-47399454)
chr4 (26-70)||(26520380-26520424)
chr4 (19-63)||(42461172-42461216)
chr4 (18-70)||(47771871-47771923)
chr4 (19-63)||(51560415-51560459)
chr4 (18-73)||(9720797-9720852)
chr4 (18-65)||(35064735-35064782)
chr4 (36-74)||(2251799-2251837)
chr4 (19-65)||(6466174-6466220)
chr4 (18-76)||(22539190-22539247)
chr4 (27-57)||(43824189-43824219)
chr4 (34-64)||(47946110-47946140)
chr4 (27-69)||(50466610-50466652)
chr4 (27-65)||(52172677-52172715)
chr4 (33-65)||(11155555-11155587)
chr4 (28-72)||(44248732-44248775)
chr4 (25-65)||(44863112-44863151)
[»] chr8 (23 HSPs)
chr8 (26-73)||(44426538-44426585)
chr8 (24-65)||(31118857-31118898)
chr8 (18-65)||(8499087-8499134)
chr8 (26-65)||(31751707-31751746)
chr8 (26-68)||(2840236-2840278)
chr8 (26-68)||(2844923-2844965)
chr8 (27-65)||(37353400-37353438)
chr8 (18-67)||(2482740-2482789)
chr8 (19-71)||(34522184-34522236)
chr8 (19-67)||(37153018-37153066)
chr8 (26-69)||(2833481-2833524)
chr8 (29-68)||(32976307-32976346)
chr8 (33-71)||(6526382-6526420)
chr8 (29-63)||(31891801-31891835)
chr8 (18-64)||(31916462-31916508)
chr8 (17-71)||(40980995-40981048)
chr8 (30-71)||(4389818-4389859)
chr8 (25-62)||(21652966-21653003)
chr8 (26-55)||(24558742-24558771)
chr8 (19-63)||(787722-787766)
chr8 (27-67)||(11647753-11647793)
chr8 (27-63)||(24350346-24350382)
chr8 (25-73)||(40599093-40599141)
[»] chr7 (22 HSPs)
chr7 (18-73)||(46945767-46945822)
chr7 (19-65)||(31002946-31002992)
chr7 (19-72)||(425965-426018)
chr7 (18-63)||(32156891-32156936)
chr7 (18-58)||(7612346-7612386)
chr7 (27-71)||(25595980-25596024)
chr7 (18-65)||(34672892-34672939)
chr7 (19-73)||(12110248-12110302)
chr7 (20-65)||(35331024-35331069)
chr7 (25-62)||(47302822-47302859)
chr7 (20-56)||(30535468-30535504)
chr7 (19-75)||(47177507-47177562)
chr7 (19-54)||(38600423-38600458)
chr7 (29-71)||(32791904-32791946)
chr7 (26-75)||(8094097-8094145)
chr7 (25-74)||(22296365-22296413)
chr7 (19-72)||(28128536-28128589)
chr7 (18-79)||(32410400-32410461)
chr7 (20-65)||(43250824-43250869)
chr7 (18-71)||(47795832-47795884)
chr7 (27-71)||(6824809-6824853)
chr7 (19-75)||(39907691-39907745)
[»] chr6 (7 HSPs)
chr6 (18-75)||(31686587-31686644)
chr6 (25-65)||(7946023-7946063)
chr6 (32-63)||(769045-769076)
chr6 (27-73)||(3785953-3785999)
chr6 (27-72)||(10657125-10657170)
chr6 (18-63)||(33890664-33890709)
chr6 (33-65)||(20368330-20368362)
[»] chr2 (15 HSPs)
chr2 (25-65)||(28039466-28039506)
chr2 (18-65)||(41880645-41880692)
chr2 (19-65)||(450015-450061)
chr2 (27-65)||(40158644-40158682)
chr2 (18-63)||(26626759-26626803)
chr2 (29-64)||(43911136-43911171)
chr2 (25-79)||(9833021-9833075)
chr2 (29-71)||(44644221-44644263)
chr2 (28-65)||(12140446-12140483)
chr2 (29-62)||(42907255-42907288)
chr2 (18-71)||(44438982-44439035)
chr2 (26-70)||(7825143-7825187)
chr2 (29-65)||(7862382-7862418)
chr2 (25-65)||(12313322-12313362)
chr2 (18-50)||(21828157-21828189)
[»] chr3 (21 HSPs)
chr3 (26-65)||(37138242-37138281)
chr3 (33-75)||(31762196-31762238)
chr3 (26-71)||(36887397-36887442)
chr3 (26-62)||(19679456-19679492)
chr3 (27-63)||(19679859-19679895)
chr3 (26-65)||(46886848-46886886)
chr3 (20-70)||(9995850-9995900)
chr3 (20-70)||(10131536-10131586)
chr3 (20-70)||(10216867-10216917)
chr3 (20-70)||(10220386-10220436)
chr3 (19-65)||(36587872-36587918)
chr3 (20-70)||(48387450-48387500)
chr3 (26-60)||(55113549-55113583)
chr3 (26-67)||(5435710-5435751)
chr3 (44-73)||(30981951-30981980)
chr3 (27-60)||(45083041-45083074)
chr3 (33-70)||(46434750-46434787)
chr3 (25-65)||(30574062-30574102)
chr3 (19-59)||(33674781-33674821)
chr3 (25-65)||(34118836-34118876)
chr3 (30-62)||(52267342-52267374)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 48064236 - 48063819
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagttgagcttattctatgcctttaaataaagcagtgtgtgacaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48064236 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagttgagcttattctatgccttgaaataaagcagtgtgtgacaga 48064137  T
Q  118 acctaagagggcacaatatgggggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttggaaatggaacaatcgaggaa 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48064136 acctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttggaaatggaacaatcgaggaa 48064037  T
Q  218 catatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatat 317  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48064036 cgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatat 48063937  T
Q  318 acatgttttctggtaacttctannnnnnngtccttaatgattatttgatgaatgttgccatgtttgtgattcattaattcattaatttagctttcttaag 417  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  48063936 acatgttttctggtaacttctatttttttgtccttaatgattatttgatgaatgttgccatgtttgtg--------attcattaatttagctttcttaag 48063845  T
Q  418 cattctttatattcagcttggtttca 443  Q
    ||||||||||||||||||||||||||    
T  48063844 cattctttatattcagcttggtttca 48063819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 88 - 334
Target Start/End: Complemental strand, 48101419 - 48101173
Alignment:
Q  88 atgcctttaaataaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattatagtaaatccaggatttgatcacaacataaagggttgg 187  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||    
T  48101419 atgcctataaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctgg 48101320  T
Q  188 agagtgtttggaaatggaacaatcgaggaacatatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcac 287  Q
    | |||||||||||||||||||||||||||||   |||||||  | | |||||||||||||||||| |||||||||| |||| |||||||| |||| ||||    
T  48101319 aaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcac 48101220  T
Q  288 agaaggtccaactgaagaaaggaatgatatacatgttttctggtaac 334  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||||    
T  48101219 agaaggtccaactgaagaaaggaatgatatatactttttctggtaac 48101173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 96 - 334
Target Start/End: Complemental strand, 48068814 - 48068576
Alignment:
Q  96 aaataaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtt 195  Q
    ||||||| ||||||||  |||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||  |||||    
T  48068814 aaataaaccagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacggtgtt 48068715  T
Q  196 tggaaatggaacaatcgaggaacatatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtc 295  Q
    ||   ||||||||||| ||||||  | ||||||||||| ||||| ||| |||||||  |||||||||| |||| |||| ||| |||| ||||| || |||    
T  48068714 tgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtc 48068615  T
Q  296 caactgaagaaaggaatgatatacatgttttctggtaac 334  Q
    |||||| |||||| ||||||||| || ||||||||||||    
T  48068614 caactggagaaagaaatgatatatattttttctggtaac 48068576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 88 - 335
Target Start/End: Complemental strand, 48107835 - 48107588
Alignment:
Q  88 atgcctttaaataaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattatagtaaatccaggatttgatcacaacataaagggttgg 187  Q
    |||||||  |||||| |||||| ||| ||||||| | || ||||||||||| || || |||||||||||| | |||||||||||||||||| ||||||||    
T  48107835 atgccttggaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattatagtaaattccggatttgatcacaacatagagggttgg 48107736  T
Q  188 agagtgtttggaaatggaacaatcgaggaacatatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcac 287  Q
    | ||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||| |||| |||| |||| ||| |||| ||||    
T  48107735 acagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcac 48107636  T
Q  288 agaaggtccaactgaagaaaggaatgatatacatgttttctggtaact 335  Q
    | | ||| || ||  |||||||| ||||||| |  ||||| |||||||    
T  48107635 aaacggttcagctagagaaaggattgatatatactttttcaggtaact 48107588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 4920901 - 4920944
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggc 69  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  4920901 cttatgctataagctgcaaattaagctgtttatccaaacatggc 4920944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 1725245 - 1725296
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagtt 76  Q
    |||||||||||||||| ||||||||||||||||| |||||||| | ||||||    
T  1725245 gcttatgctataagctccaaattaagttgtttatacaaacatgtcttaagtt 1725296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 27820483 - 27820529
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  27820483 gataagcgcttatgctataagctgcaaa-taagttgtttatccaaaca 27820529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 7472601 - 7472551
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    |||||||||||||||||||||||  |||||||| |||||||||||| ||||    
T  7472601 gataagggcttatgctataagcttgaaattaagctgtttatccaaatatgg 7472551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 10082517 - 10082563
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||    
T  10082517 ttatgctataagctgaaatttaagttgtttatccaaacatggactaa 10082563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 10280568 - 10280522
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  10280568 ataagcgcttatgctataagctgtaaactaagttgtttatccaaaca 10280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 34619514 - 34619552
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34619514 ttatgctataagctgcaaattaagctgtttatccaaaca 34619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 2194478 - 2194525
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  2194478 gcttatgc-ataagctgcaaattaagctgtttatccaaacagggcctaa 2194525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 31517887 - 31517927
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  31517887 gcttatgctataagctgcaaattaagctatttatccaaaca 31517927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 37593812 - 37593856
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaa 62  Q
    |||||| |||| |||| ||||||||||||||||||||||||||||    
T  37593812 gataagcgcttttgctttaagctgcaaattaagttgtttatccaa 37593856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 10744235 - 10744188
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||||||    
T  10744235 gataagcgcttatgctataagctgagaattaagttgtttatacaaaca 10744188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 11218100 - 11218135
Alignment:
Q  30 tgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11218100 tgctataagctgcaaattatgttgtttatccaaaca 11218135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 11560695 - 11560730
Alignment:
Q  44 aattaagttgtttatccaaacatggcctaagttgag 79  Q
    ||||||||||||||||||||||||||| ||||||||    
T  11560695 aattaagttgtttatccaaacatggcccaagttgag 11560730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 35058899 - 35058946
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| |||||||||||||| |||||| |||| ||||||||||||||    
T  35058899 gataagtgcttatgctataagttgcaaaataagctgtttatccaaaca 35058946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 35925616 - 35925585
Alignment:
Q  34 ataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||||||||||||||||||||||    
T  35925616 ataagctgcaaattaagttgtttatccaaaca 35925585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 37841925 - 37841886
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgttta 57  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  37841925 gataagtgcttatgctattagctgcaaattaagttgttta 37841886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 38219859 - 38219816
Alignment:
Q  31 gctataagctgcaaattaagttgtttatccaaacatggcctaag 74  Q
    |||||||||||||||||||| |||||||||||||| || |||||    
T  38219859 gctataagctgcaaattaagatgtttatccaaacagggtctaag 38219816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 9236977 - 9237019
Alignment:
Q  36 aagctgcaaattaagttgtttatccaaacatggcctaagttga 78  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||    
T  9236977 aagctgaaaattaagttgtttatccaaacagggccttagttga 9237019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 33527275 - 33527321
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| ||||||||| ||||||||||| |||| ||||||||||||||    
T  33527275 ataagcgcttatgctctaagctgcaaaataagctgtttatccaaaca 33527321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 34404978 - 34404932
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| ||||| | |||||||| ||||||||||||||||||||||||    
T  34404978 ataagtgcttacgttataagcttcaaattaagttgtttatccaaaca 34404932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 36070192 - 36070146
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| |||||||||||||||||||||||| | ||||||| ||||||    
T  36070192 ataagcgcttatgctataagctgcaaattaggctgtttatacaaaca 36070146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 37617556 - 37617609
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    |||||||||| |||||||||||||||| ||| |||||||| |||||||| |||||    
T  37617556 ataagggcttgtgctataagctgcaaa-taaattgtttatacaaacatgccctaa 37617609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 1510100 - 1510137
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  1510100 tataagctacaaattaagttgtttatccaaacagggcc 1510137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 46423196 - 46423148
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    ||||| |||| || |||||||||||||| |||||||||||||||||||||    
T  46423196 ataagtgcttgtgttataagctgcaaat-aagttgtttatccaaacatgg 46423148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 4576716 - 4576660
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaag 74  Q
    |||||| ||||||||||||||||  |||||| ||| |||||||||||| || |||||    
T  4576716 gataagcgcttatgctataagctataaattatgttatttatccaaacagggtctaag 4576660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 27970417 - 27970460
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    ||||| |||| |||||||||||||||| |||||||||||||||||    
T  27970417 ataagtgcttctgctataagctgcaaa-taagttgtttatccaaa 27970460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 29128434 - 29128466
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttat 58  Q
    ||||||||||||||||||||||||| |||||||    
T  29128434 cttatgctataagctgcaaattaagctgtttat 29128466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 8089718 - 8089669
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggcctaagt 75  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  8089718 cttatgctatgagctacaaattaagttgtttatccaaacatggcctaagt 8089669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 10772029 - 10772076
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  10772029 cttatgctataagctgcaaattaagttgtatattcaaacatggtctaa 10772076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 30291188 - 30291141
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| | ||||||||||||||||||||||||||| |||||||||||    
T  30291188 gataagtgtttatgctataagctgcaaattaagttggttatccaaaca 30291141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 41819539 - 41819484
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    |||||| | ||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  41819539 gataagtgtttatgctataagctgtaaattaagttgcttacccaaacatggcctaa 41819484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 6593218 - 6593180
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6593218 ttatgctataagctgtaaattaagttgtttatccaaaca 6593180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 29845050 - 29845092
Alignment:
Q  28 tatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  29845050 tatgctataagttgcaaattaagttgtttatccaaacagggcc 29845092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 40731213 - 40731171
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  40731213 cttatgctataagctgcaaaataatttgtttatccaaacatgg 40731171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 32372541 - 32372493
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatg 67  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  32372541 gataagtgcttgtgctataagctgcaaat-aagttgtttatccaaacatg 32372493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 32928017 - 32927972
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||    
T  32928017 gcttatgatataagctgcaaattaagttgtttattcaaacagggcc 32927972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 38105013 - 38105058
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  38105013 gcttacgctataagctgcaaaataagttgtttatccaaacagggcc 38105058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 5559642 - 5559610
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||||||||||||||||||||||    
T  5559642 tataagctgcaaattaagttgtttatccaaaca 5559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 32849130 - 32849082
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    ||||||||||||||||||||| |||| || ||||||||||| |||||||    
T  32849130 gcttatgctataagctgcaaaataagatgcttatccaaacaaggcctaa 32849082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 11715018 - 11715049
Alignment:
Q  34 ataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||||||||||||||||||||||    
T  11715018 ataagctgcaaattaagttgtttatccaaaca 11715049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 28776902 - 28776856
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  28776902 gataagtgcttaggctataagctgcaaa-taagttgtttatccaaaca 28776856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 42573922 - 42573969
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| ||| | |||||||||||||||||||| ||||||||||||||    
T  42573922 gataagcgctcaggctataagctgcaaattaagctgtttatccaaaca 42573969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 3520341 - 3520296
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||||    
T  3520341 gcttgtgctataagctgaaaat-aagttgtttatccaaacatggcct 3520296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 11706776 - 11706742
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatc 59  Q
    |||| ||||||||||||||||||||||||||||||    
T  11706776 gcttttgctataagctgcaaattaagttgtttatc 11706742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 14675052 - 14675090
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  14675052 ttatgccataagctgcaaattaagttgtttgtccaaaca 14675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 26796388 - 26796338
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||| |||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  26796388 taagcgcttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 26796338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 26799906 - 26799856
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||| |||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  26799906 taagcgcttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 26799856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 26807456 - 26807406
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||| |||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  26807456 taagcgcttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 26807406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 34368662 - 34368700
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  34368662 tataagctgcaaatcaagatgtttatccaaacatggcct 34368700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 37914696 - 37914650
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| |||||||||| ||||| ||||||||| ||||||||||||||    
T  37914696 ataagtgcttatgctagaagctacaaattaagctgtttatccaaaca 37914650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 5390203 - 5390232
Alignment:
Q  27 ttatgctataagctgcaaattaagttgttt 56  Q
    ||||||||||||||||||||||||||||||    
T  5390203 ttatgctataagctgcaaattaagttgttt 5390232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 8089057 - 8089024
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatc 59  Q
    |||| |||||||||||||||||||||||||||||    
T  8089057 cttacgctataagctgcaaattaagttgtttatc 8089024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 5963432 - 5963468
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatcca 61  Q
    |||||||||||||  ||||||||||||||||||||||    
T  5963432 gcttatgctataaattgcaaattaagttgtttatcca 5963468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 12467102 - 12467070
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||||||| |||||||||||||||    
T  12467102 tataagctgcaaattaaattgtttatccaaaca 12467070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 13697919 - 13697958
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  13697919 gcttatgttataagctgcaaat-aagttgtttatccaaaca 13697958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 14955626 - 14955594
Alignment:
Q  43 aaattaagttgtttatccaaacatggcctaagt 75  Q
    ||||||||||||||||||||||| |||||||||    
T  14955626 aaattaagttgtttatccaaacagggcctaagt 14955594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 50298458 - 50298405
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||||||||    
T  50298458 gataagtgtttatgctataagcttcaaattaagttgtttatccaaacatggcct 50298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 26883923 - 26883869
Alignment:
Q  17 agataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  26883923 agataagcgcttatgctatatgctgcaaattaagttgtttatacaaacatagcct 26883869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 54214932 - 54214895
Alignment:
Q  28 tatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54214932 tatgctataagctgcaaattaagttgtttatccaaaca 54214895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 45214303 - 45214251
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta 72  Q
    |||| ||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  45214303 taagcgcttatgctttaagccgcaaattaagttgtttattcaaacatggccta 45214251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 20936358 - 20936409
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    ||||| |||||| ||||||||||||||||||| | |||||||||||||||||    
T  20936358 ataagtgcttatactataagctgcaaattaagctctttatccaaacatggcc 20936409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 2987108 - 2987066
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    |||||| ||||||||||||||||| ||||||||||||||||||    
T  2987108 cttatgttataagctgcaaattaacttgtttatccaaacatgg 2987066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 10206042 - 10206092
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||| ||||||    
T  10206042 gataagtgcttaagctgtaagctgcaaattaagttgtttatccagacatgg 10206092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 17823058 - 17823012
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggccta 72  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||||    
T  17823058 cttatgctatgagctgcaaattaagctgtttatccaaacaaggccta 17823012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 30066910 - 30066956
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  30066910 ataagcgcttatgctataagctgcaaattaaattgtttatgcaaaca 30066956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 39886716 - 39886766
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    |||||| | ||||||||||||||||||| ||| ||||||||||||||||||    
T  39886716 gataagcgtttatgctataagctgcaaaataatttgtttatccaaacatgg 39886766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 19039693 - 19039656
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  19039693 tataagctgcaaattaagttgtttatccaaacagggcc 19039656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 47399454 - 47399409
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||||| |||||||||||||| ||||||||||||||||||| ||||    
T  47399454 gcttatcctataagctgcaaactaagttgtttatccaaacagggcc 47399409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 26520380 - 26520424
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  26520380 cttatgctagaagcagcaaattaagttgtttatccaaacagggcc 26520424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 42461216 - 42461172
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    ||||| |||||| |||||||||| |||||||||||||||||||||    
T  42461216 ataagtgcttatcctataagctgaaaattaagttgtttatccaaa 42461172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 47771923 - 47771871
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||||| |||||||||||||||| |||| |||| |||||||||||||| ||||    
T  47771923 gataagcgcttatgctataagctccaaaataagctgtttatccaaacagggcc 47771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 51560415 - 51560459
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||    
T  51560415 ataagcgcttatgcaataagctgtaaattaagttgtttatccaaa 51560459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 9720797 - 9720852
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    |||||| ||||||| ||||||||||||||| | |||||||||||| ||||| ||||    
T  9720797 gataagcgcttatgatataagctgcaaatttaattgtttatccaatcatgggctaa 9720852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 35064782 - 35064735
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| |||| ||||||||  ||||||||||||||||||||||||||    
T  35064782 gataagcgcttttgctataaattgcaaattaagttgtttatccaaaca 35064735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 2251837 - 2251799
Alignment:
Q  36 aagctgcaaattaagttgtttatccaaacatggcctaag 74  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  2251837 aagctgcaaattaaattgtttatccaaacatgccctaag 2251799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 6466174 - 6466220
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| ||||| |||||||||||||||  ||||||||||||||||||    
T  6466174 ataagcgcttacgctataagctgcaaaagaagttgtttatccaaaca 6466220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 22539190 - 22539247
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagtt 76  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||| | ||||| ||||    
T  22539190 gataagggcttatgctataacctgcaaa-taagttatttatccaaagagggccttagtt 22539247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 43824219 - 43824189
Alignment:
Q  27 ttatgctataagctgcaaattaagttgttta 57  Q
    |||||||||||||||||||||||||||||||    
T  43824219 ttatgctataagctgcaaattaagttgttta 43824189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 47946140 - 47946110
Alignment:
Q  34 ataagctgcaaattaagttgtttatccaaac 64  Q
    |||||||||||||||||||||||||||||||    
T  47946140 ataagctgcaaattaagttgtttatccaaac 47946110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 50466610 - 50466652
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaacatggc 69  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||    
T  50466610 ttatgttataagctgcaaattaaattgtttacccaaacatggc 50466652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 52172715 - 52172677
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  52172715 ttatgctaaaaggtgcaaattaagttgtttatccaaaca 52172677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 11155555 - 11155587
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||| |||||||||||||||||||    
T  11155555 tataagctgcaaagtaagttgtttatccaaaca 11155587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 44248775 - 44248732
Alignment:
Q  28 tatgctataagctgcaaattaagttgtttatccaaacatggccta 72  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||    
T  44248775 tatgctataagctgcaaatt-agttgtttatccaaatagggccta 44248732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 44863112 - 44863151
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  44863112 gcttgtgctataagctgcaaat-aagttgtttatccaaaca 44863151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 44426538 - 44426585
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  44426538 cttatgctataagctgcaaattaagttgtttacccaaacatgacctaa 44426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 31118857 - 31118898
Alignment:
Q  24 ggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  31118857 ggcttatgctataagctgcacattaagttgtttatccaaaca 31118898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 8499134 - 8499087
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  8499134 gataagcgcttatactataagttgcaaattaagttgtttatccaaaca 8499087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 31751707 - 31751746
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  31751707 cttatactataagctgcaaattaagttgtttatccaaaca 31751746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 2840278 - 2840236
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  2840278 cttatgctataagctgcaaaataagttgtttatacaaacatgg 2840236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 2844965 - 2844923
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  2844965 cttatgctataagctgcaaaataagttgtttatacaaacatgg 2844923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 37353400 - 37353438
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  37353400 ttatgctataagctgcaaatcaagttgtttatccaaaca 37353438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 2482789 - 2482740
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatg 67  Q
    |||||| | |||||||||||||| ||||||||| ||||||||||||||||    
T  2482789 gataagtgtttatgctataagcttcaaattaagctgtttatccaaacatg 2482740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 34522184 - 34522236
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    ||||| ||||||||| |||| |||||| |||||| ||||||||||||||||||    
T  34522184 ataagcgcttatgctgtaagttgcaaaataagttttttatccaaacatggcct 34522236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 37153018 - 37153066
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatg 67  Q
    ||||| |||||| ||||||| |||||||||||||||| |||||||||||    
T  37153018 ataagcgcttatcctataagttgcaaattaagttgttaatccaaacatg 37153066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 2833481 - 2833524
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggc 69  Q
    |||||||||||||||||||| ||||  |||||||||||||||||    
T  2833481 cttatgctataagctgcaaaataagcagtttatccaaacatggc 2833524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 32976346 - 32976307
Alignment:
Q  29 atgctataagctgcaaattaagttgtttatccaaacatgg 68  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  32976346 atgctataagctgcatattaaggtgtttatccaaacatgg 32976307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 6526382 - 6526420
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  6526382 tataagctgcaaattaagctgtttatccaaacaaggcct 6526420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 31891835 - 31891801
Alignment:
Q  29 atgctataagctgcaaattaagttgtttatccaaa 63  Q
    ||||||||| |||||||||||||||||||||||||    
T  31891835 atgctataaactgcaaattaagttgtttatccaaa 31891801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 31916508 - 31916462
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaac 64  Q
    |||||| |||||||| ||||||||||||| ||||||||||| |||||    
T  31916508 gataagcgcttatgccataagctgcaaatgaagttgtttattcaaac 31916462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 40981048 - 40980995
Alignment:
Q  17 agataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    ||||||| |||| |||||||||||||||| |||| |||||||||||||| |||||    
T  40981048 agataagcgcttgtgctataagctgcaaa-taagctgtttatccaaacagggcct 40980995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 4389859 - 4389818
Alignment:
Q  30 tgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||||||||||||| |||||| |||||||||||| |||||    
T  4389859 tgctataagctgcaaaataagttatttatccaaacagggcct 4389818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 21653003 - 21652966
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaa 62  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  21653003 gcttttgctataagttgcaaattaagttgtttatccaa 21652966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 24558771 - 24558742
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtt 55  Q
    ||||||||||||||||||||||||||||||    
T  24558771 cttatgctataagctgcaaattaagttgtt 24558742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 787766 - 787722
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    ||||| || ||||||||||| |||||||||| |||||||||||||    
T  787766 ataagcgcatatgctataagttgcaaattaaattgtttatccaaa 787722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 11647793 - 11647753
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaacatg 67  Q
    |||||||||||||| ||||||||||||||| || |||||||    
T  11647793 ttatgctataagctacaaattaagttgtttgtctaaacatg 11647753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 24350382 - 24350346
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  24350382 ttatgctataagttgcaaattaagttgtctatccaaa 24350346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 40599093 - 40599141
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    |||||||| ||||||| ||||||||  |||||||||||| |||||||||    
T  40599093 gcttatgccataagcttcaaattaatctgtttatccaaatatggcctaa 40599141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 46945822 - 46945767
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  46945822 gataagcgcttaagctataagctgcaaactaagttgtttatccaaacaaggcctaa 46945767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 31002946 - 31002992
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  31002946 ataagcgcttatgctataagatgcaaattaagttgtttatccaaaca 31002992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 425965 - 426018
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta 72  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||||| ||||||    
T  425965 ataagcgcttatgctataagctgcaaaataagttatttatccaaacagggccta 426018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 32156936 - 32156891
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    |||||| | |||||||||||||||||||||||||||||||||||||    
T  32156936 gataagcgtttatgctataagctgcaaattaagttgtttatccaaa 32156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 7612386 - 7612346
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttat 58  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  7612386 gataagtgcttatgctataagctgcaaattaagttgtttat 7612346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 25596024 - 25595980
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||||||||||||||| |||||||||||||||||||| |||||    
T  25596024 ttatgctataagctgcaagttaagttgtttatccaaacagggcct 25595980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 34672892 - 34672939
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  34672892 gataagtgcttatgctataagctgaaaattaagctgtttatccaaaca 34672939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 12110302 - 12110248
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||| |||||||    
T  12110302 ataagtgcttatgctataagttgcaaattaagctgtttatcgaaacagggcctaa 12110248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 35331069 - 35331024
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||    
T  35331069 taagtgcttatgctataagctgtaaattaagttgtttttccaaaca 35331024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 47302859 - 47302822
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaa 62  Q
    |||||||||| |||||||||||||||||||||||||||    
T  47302859 gcttatgctacaagctgcaaattaagttgtttatccaa 47302822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 30535504 - 30535468
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgttt 56  Q
    |||| ||||||||||||||||||||||||||||||||    
T  30535504 taagtgcttatgctataagctgcaaattaagttgttt 30535468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 47177562 - 47177507
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagt 75  Q
    ||||| ||||||||||||| | |||||| ||||||||||||||||||||||| ||||    
T  47177562 ataagtgcttatgctataatcagcaaat-aagttgtttatccaaacatggccaaagt 47177507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 38600423 - 38600458
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgt 54  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38600423 ataagcgcttatgctataagctgcaaattaagttgt 38600458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 32791904 - 32791946
Alignment:
Q  29 atgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||| |||||||||||||||||||||| ||||||| |||||    
T  32791904 atgctacaagctgcaaattaagttgtttacccaaacagggcct 32791946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 8094145 - 8094097
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggcctaagt 75  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||| ||||    
T  8094145 cttatgct-taagccgcaacttaagttgtttatccaaacatggcccaagt 8094097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 22296365 - 22296413
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcctaag 74  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||| ||||    
T  22296365 gcttgtgctataagctgcaaat-aagttgtttatctaaacatggcgtaag 22296413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 28128536 - 28128589
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta 72  Q
    |||||||| ||||| |||||||| |||||| |||| ||||||||||| ||||||    
T  28128536 ataagggcgtatgcgataagctggaaattacgttgcttatccaaacagggccta 28128589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 32410461 - 32410400
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagttgag 79  Q
    |||||| |||| || |||| |||||||||||| ||||||| ||||||| ||| |||||||||    
T  32410461 gataagtgcttgtgttatatgctgcaaattaatttgtttaaccaaacagggcataagttgag 32410400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 43250824 - 43250869
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||| ||||| ||||| |||||||||| ||||||||||||||||||    
T  43250824 taagtgcttaagctatcagctgcaaataaagttgtttatccaaaca 43250869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 47795884 - 47795832
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||| ||||||||||||||||||||| |||| |||||||| ||||| |||||    
T  47795884 gataagcgcttatgctataagctgcaaa-taagctgtttatctaaacaaggcct 47795832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 6824853 - 6824809
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||||||||| ||||||||||  |||||||||||||| |||||    
T  6824853 ttatgctataaggtgcaaattaaactgtttatccaaacagggcct 6824809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 39907745 - 39907691
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagt 75  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||| || ||||||    
T  39907745 ataagtgcttatgctataagctgcaaa-taagttg-ttatccaaacagggtctaagt 39907691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 31686587 - 31686644
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagt 75  Q
    |||||| ||||||||| || |||||||||||||||| ||||| |||||||||||||||    
T  31686587 gataagcgcttatgctgtatgctgcaaattaagttgattatctaaacatggcctaagt 31686644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 7946023 - 7946063
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  7946023 gcttatgctataagctacaaaataagttgtttatccaaaca 7946063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 769076 - 769045
Alignment:
Q  32 ctataagctgcaaattaagttgtttatccaaa 63  Q
    ||||||||||||||||||||||||||||||||    
T  769076 ctataagctgcaaattaagttgtttatccaaa 769045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 3785953 - 3785999
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaacatggcctaa 73  Q
    ||||||||||| |||||||||||| | |||||||||||| |||||||    
T  3785953 ttatgctataaactgcaaattaagctttttatccaaacaaggcctaa 3785999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 10657170 - 10657125
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaacatggccta 72  Q
    |||||||||| |||||||| |||||||||||||| |||||| ||||    
T  10657170 ttatgctatatgctgcaaaataagttgtttatccgaacatgaccta 10657125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 33890709 - 33890664
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    |||||| | ||||||||||||||||||| |||||| ||||||||||    
T  33890709 gataagtgtttatgctataagctgcaaaataagttatttatccaaa 33890664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 20368330 - 20368362
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||| ||||||||||||||||||||||    
T  20368330 tataagctgccaattaagttgtttatccaaaca 20368362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 28039466 - 28039506
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  28039466 gcttatgctataaactgcaaattaagttgtttatccaaaca 28039506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 41880645 - 41880692
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||    
T  41880645 gataagcgcttgtgctataagctgcaaagtaagttgtttatccaaaca 41880692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 450015 - 450061
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||    
T  450015 ataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 450061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 40158682 - 40158644
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40158682 ttatgctataagctacaaattaagttgtttatccaaaca 40158644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 26626803 - 26626759
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||    
T  26626803 gataagagcttatgctataagctgcaaa-taagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 43911136 - 43911171
Alignment:
Q  29 atgctataagctgcaaattaagttgtttatccaaac 64  Q
    |||||||||||||||||||| |||||||||||||||    
T  43911136 atgctataagctgcaaattaggttgtttatccaaac 43911171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 9833075 - 9833021
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaacatggcctaagttgag 79  Q
    ||||||||||||||||| ||||||||||||||||   |||| || ||||||||||    
T  9833075 gcttatgctataagctgtaaattaagttgtttataagaacaaggtctaagttgag 9833021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 44644263 - 44644221
Alignment:
Q  29 atgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||    
T  44644263 atgctgtaagctgcaaaataagttgtttatctaaacatggcct 44644221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 12140483 - 12140446
Alignment:
Q  28 tatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  12140483 tatgatataagctgcaaaataagttgtttatccaaaca 12140446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 42907288 - 42907255
Alignment:
Q  29 atgctataagctgcaaattaagttgtttatccaa 62  Q
    |||||||||||||||||||||| |||||||||||    
T  42907288 atgctataagctgcaaattaagctgtttatccaa 42907255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 44438982 - 44439035
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    |||||| || ||||||||||||||||||||||| |||||| |||| ||| ||||    
T  44438982 gataagtgcctatgctataagctgcaaattaagctgtttacccaaccattgcct 44439035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 7825187 - 7825143
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||||| ||||| || ||||||||| |||||||||||||||||||    
T  7825187 cttatggtataaacttcaaattaagctgtttatccaaacatggcc 7825143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 7862418 - 7862382
Alignment:
Q  29 atgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||| |||||||||||||| |||||||||    
T  7862418 atgctataagctacaaattaagttgttaatccaaaca 7862382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 12313322 - 12313362
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||| |||||||||||||| |||| ||||||||||||||    
T  12313322 gcttatactataagctgcaaaataagatgtttatccaaaca 12313362  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 21828189 - 21828157
Alignment:
Q  18 gataagggcttatgctataagctgcaaattaag 50  Q
    |||||||||||||||||||||||||||| ||||    
T  21828189 gataagggcttatgctataagctgcaaaataag 21828157  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 37138281 - 37138242
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  37138281 cttatgctataagcttcaaattaagttgtttatccaaaca 37138242  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 31762238 - 31762196
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaacatggcctaagt 75  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  31762238 tataagctgcaaattaagttgtttatccaaacaagacctaagt 31762196  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 36887442 - 36887397
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatggcct 71  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  36887442 cttatcctataagctacaaattaagatgtttatccaaacatggcct 36887397  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 19679456 - 19679492
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaa 62  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19679456 cttatactataagctgcaaattaagttgtttatccaa 19679492  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 19679859 - 19679895
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatccaaa 63  Q
    |||||||||||||||||||||||||||||| ||||||    
T  19679859 ttatgctataagctgcaaattaagttgtttctccaaa 19679895  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 46886848 - 46886886
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  46886848 cttatgctataagctgcaaa-taagttgtttatccaaaca 46886886  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 9995900 - 9995850
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||| |||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  9995900 taagcgcttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 9995850  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 10131586 - 10131536
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||| |||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  10131586 taagcgcttatgcaataagatgcaaaataagttgtttatccaaacagggcc 10131536  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 10216917 - 10216867
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||| |||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  10216917 taagcgcttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 10216867  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 10220436 - 10220386
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||| |||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  10220436 taagcgcttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 10220386  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 36587918 - 36587872
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||| ||||||||||||||||| ||||||| ||||||||| |||||    
T  36587918 ataagcgcttatgctataagctgtaaattaaattgtttatcgaaaca 36587872  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 48387450 - 48387500
Alignment:
Q  20 taagggcttatgctataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    |||| ||||||| |||||| |||||| ||||||||||||||||||| ||||    
T  48387450 taagcgcttatgttataagatgcaaaataagttgtttatccaaacaaggcc 48387500  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 55113583 - 55113549
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatcc 60  Q
    ||||||||||||||||||||||||||||| |||||    
T  55113583 cttatgctataagctgcaaattaagttgtgtatcc 55113549  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 5435751 - 5435710
Alignment:
Q  26 cttatgctataagctgcaaattaagttgtttatccaaacatg 67  Q
    |||||||||||||||| |||||||||||  ||||||||||||    
T  5435751 cttatgctataagctgtaaattaagttgcctatccaaacatg 5435710  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 30981980 - 30981951
Alignment:
Q  44 aattaagttgtttatccaaacatggcctaa 73  Q
    ||||||||||||||||||||||||||||||    
T  30981980 aattaagttgtttatccaaacatggcctaa 30981951  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 45083074 - 45083041
Alignment:
Q  27 ttatgctataagctgcaaattaagttgtttatcc 60  Q
    ||||||||||| ||||||||||||||||||||||    
T  45083074 ttatgctataaactgcaaattaagttgtttatcc 45083041  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 46434750 - 46434787
Alignment:
Q  33 tataagctgcaaattaagttgtttatccaaacatggcc 70  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  46434750 tataagctgcaaaataagttgtttatccaaacaaggcc 46434787  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 30574062 - 30574102
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    ||||||| |||||||||||||||| | ||||||||||||||    
T  30574062 gcttatgatataagctgcaaattatggtgtttatccaaaca 30574102  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 33674781 - 33674821
Alignment:
Q  19 ataagggcttatgctataagctgcaaattaagttgtttatc 59  Q
    ||||| |||||||||||| ||||||||||||| ||||||||    
T  33674781 ataagcgcttatgctataggctgcaaattaagctgtttatc 33674821  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 34118876 - 34118836
Alignment:
Q  25 gcttatgctataagctgcaaattaagttgtttatccaaaca 65  Q
    |||||||||||||| || || ||||||||||||||||||||    
T  34118876 gcttatgctataagttgtaatttaagttgtttatccaaaca 34118836  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 52267374 - 52267342
Alignment:
Q  30 tgctataagctgcaaattaagttgtttatccaa 62  Q
    |||||||||||||||||||| ||||||||||||    
T  52267374 tgctataagctgcaaattaaattgtttatccaa 52267342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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