View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10453_low_4 (Length: 247)
Name: NF10453_low_4
Description: NF10453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10453_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 48537088 - 48536856
Alignment:
| Q |
1 |
tggctaatacactcttctttacttctttgctttaccgttctacgacggagcataaacgggatggtatgaactttcccttttcaccttttcataccctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48537088 |
tggctaatacactcttctttacttctttgctttaccgttctacgacggagcataaacgggatggtatgaactttcccttttcaccttttcataccctcaa |
48536989 |
T |
|
| Q |
101 |
catatttatttatttgcaattaaaagtttgttactctaagtctatttgtccaatacagtgtttgaaagcatcgtactttccctgaaattcaattgagctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48536988 |
catatttatttatttgcaattaaaagtttgttactctaagtctatttgtccaatacagtgtttgaaagcatcgtactttccctgaaattcaattgagctt |
48536889 |
T |
|
| Q |
201 |
gtttttgtattggaaacattggttccttgatgt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48536888 |
atttttgtattggaaacattggttccttgatgt |
48536856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University