View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10453_low_5 (Length: 238)
Name: NF10453_low_5
Description: NF10453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10453_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 22300323 - 22300101
Alignment:
| Q |
16 |
tttgcatagttgcattaatgaattgagtaggcaagacaaagaatcatcccatatttttctgacnnnnnnnncaacattgagaatttctccatttctatcc |
115 |
Q |
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| T |
22300323 |
tttgcatagttgcattaatgaattgagtaggcaagacaaagaatcatcccatatttttctgacttttttttcaacattgagaatttctccatttctatcc |
22300224 |
T |
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| Q |
116 |
cgtgacagtacttaggcaaagattctcatcattttcaaagattacattgaataggctatgtgaattttcaaaatgtatgttaaggaaaagnnnnnnnatt |
215 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22300223 |
cgtgactgtacttaggcaaagattctcagcattttcaaagattacattgaataggctatgtgaattttcaaaatgtatgttaaggaaaagtttttttatt |
22300124 |
T |
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| Q |
216 |
ttctgtacgaaaaagttatacac |
238 |
Q |
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||||| ||||||||||||||||| |
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| T |
22300123 |
ttctggacgaaaaagttatacac |
22300101 |
T |
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