View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10454_high_3 (Length: 432)

Name: NF10454_high_3
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10454_high_3
NF10454_high_3
[»] chr7 (1 HSPs)
chr7 (11-421)||(16357560-16357976)
[»] chr8 (3 HSPs)
chr8 (225-350)||(505505-505630)
chr8 (256-371)||(4268654-4268769)
chr8 (316-371)||(9776593-9776648)
[»] chr2 (2 HSPs)
chr2 (241-371)||(43561786-43561916)
chr2 (266-335)||(36077744-36077813)
[»] chr4 (1 HSPs)
chr4 (264-395)||(41521670-41521801)
[»] chr6 (2 HSPs)
chr6 (289-395)||(33589180-33589286)
chr6 (286-395)||(33602299-33602408)
[»] chr3 (1 HSPs)
chr3 (264-371)||(51237916-51238023)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 16357560 - 16357976
Alignment:
Q  11 catcaatatcatcatttgtagtagcagttgtagatggagaacttgaattcgactcttgaacattatcaatggaagaaagagttgaaaatgaaacttg--- 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       
T  16357560 catcaatatcatcatttgtagtagcagttgtagatggagaacttgaattagactcttgaacattatcaatggaagaaagagttgaaaatgaaacttgatc 16357659  T
Q  108 ---atcttgatcttgatcttccttaatctcctcaaacacaattgctgctgcttttgcagctgcaagttgaatgtccttaggtgatgtagtcgaaggcctc 204  Q
       ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16357660 ttgatcttgatcttgatcttccttaatctcctcaaatacaatggctgctgcttttgcagctgcaacttgaatgtccttaggtgatgtagtcgaaggcctc 16357759  T
Q  205 ggaagattttgagccaaattagggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtag 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16357760 ggaagattttgagccaaattagggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtag 16357859  T
Q  305 ggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctatatgtagggtg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16357860 ggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctatatgtagggtg 16357959  T
Q  405 ttttgtgtcattttcat 421  Q
    |||||||||||||||||    
T  16357960 ttttgtgtcattttcat 16357976  T

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Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 225 - 350
Target Start/End: Original strand, 505505 - 505630
Alignment:
Q  225 agggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatatt 324  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  505505 agggaaattaaggtatgctgaatgaccctttatagctaaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatatt 505604  T
Q  325 cttgacttctttcttggctcacgaat 350  Q
    ||||| || ||  |||||||||||||    
T  505605 cttgattttttctttggctcacgaat 505630  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 4268769 - 4268654
Alignment:
Q  256 atggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcag 355  Q
    |||| |||||| |||||||| || ||||||||||||||||| | ||| | | ||||||| ||||| |||||||| || || | ||| || || |||||||    
T  4268769 atggttaaagctgctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcag 4268670  T
Q  356 atacccattttcccca 371  Q
    ||||||||||||||||    
T  4268669 atacccattttcccca 4268654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 9776593 - 9776648
Alignment:
Q  316 agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca 371  Q
    ||||||||||||||||| ||||||||||| | ||| || || ||||||||||||||    
T  9776593 agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca 9776648  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 371
Target Start/End: Original strand, 43561786 - 43561916
Alignment:
Q  241 gctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttg 340  Q
    |||||||||||||||||    |||||||| |||||||| |||||||||||||||||||  |||| ||| ||||||||||| |||| ||| || || |  |    
T  43561786 gctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgag 43561885  T
Q  341 gctcacgaatttcagatacccattttcccca 371  Q
    | || || ||||| |||||||||||||||||    
T  43561886 gttcgcggatttccgatacccattttcccca 43561916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 36077744 - 36077813
Alignment:
Q  266 cagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctt 335  Q
    ||||||||||||| ||| ||||||||||||| | ||||||||| ||||| |||||||||||||| |||||    
T  36077744 cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgatttctt 36077813  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 41521801 - 41521670
Alignment:
Q  264 agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccat 363  Q
    |||||| ||||||||||||||||| ||||| ||||  || ||  | ||||| ||||| |||||||| || ||||||||||| | ||| || |||||||||    
T  41521801 agcagccacatcatgagctctagcagccatatcaggagttggaaaagttccgagccaaattcttgatttttttcttggctctctaatctctgatacccat 41521702  T
Q  364 tttccccatgctctcattcttacacctctata 395  Q
    || ||||||   | ||||||||| ||||||||    
T  41521701 ttgccccattgacgcattcttactcctctata 41521670  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 395
Target Start/End: Complemental strand, 33589286 - 33589180
Alignment:
Q  289 gccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacac 388  Q
    ||||||||||| ||||  |||||||||||||| ||||     ||||||| ||| ||||| ||||| ||||||||||||||||||| || |||||| || |    
T  33589286 gccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgttcgcattctaactc 33589187  T
Q  389 ctctata 395  Q
    |||||||    
T  33589186 ctctata 33589180  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 395
Target Start/End: Complemental strand, 33602408 - 33602299
Alignment:
Q  286 gctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattctta 385  Q
    |||||||||||||| || | | ||||||| ||||| ||||     ||||||| ||| || || |||||||| |||||||||||||||| || ||||||||    
T  33602408 gctgccatttcagcggttgcgaatgttcctagccagattcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattctta 33602309  T
Q  386 cacctctata 395  Q
    ||||||||||    
T  33602308 cacctctata 33602299  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 51238023 - 51237916
Alignment:
Q  264 agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttctt-ggctcacgaatttcagataccca 362  Q
    |||||||||||| || |||| |||||||||||| | ||| ||  |||| || ||||||||||  || || |||||| |||||||||||||| || |||||    
T  51238023 agcagctacatcgtgtgctcgagctgccatttccggtgtgggaaatgtgccgagccatattcgggattt-tttcttaggctcacgaatttcggacaccca 51237925  T
Q  363 ttttcccca 371  Q
    |||||||||    
T  51237924 ttttcccca 51237916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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