View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10454_low_10 (Length: 299)
Name: NF10454_low_10
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 32163475 - 32163199
Alignment:
| Q |
1 |
agagcaaacttgcaagagtaactgaatttggcaaaatcctataccatttcttatcggtaaacaactccaacgcagcttgaggataacctctctgagtata |
100 |
Q |
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| T |
32163475 |
agagcaaacttgcaagagtaactgaatttggcaaaatcctataccatttcttatcggtaaacaactccaacgcagcttgaggataacctctctgagtata |
32163376 |
T |
|
| Q |
101 |
cccaacaatcatagccgtccaaaaaacaagatcgtcaccaccaccacaagtcgaaactgaaaattcatcaaacacggaacgagcatcaccaatatcacca |
200 |
Q |
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| T |
32163375 |
cccgacaatcatagccgtccaaaaaacaagatcgtcaccaccaccacaagtcgaaactgaaaattcatcaaacacggaacgagcatcaccaatatcacca |
32163276 |
T |
|
| Q |
201 |
catttaacatacatattcaaaagagaagtagccaaataagaattaatctcaatcccattcttaataacatacccatg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32163275 |
catttaacatacatattcaaaagagaagtagccaaataagaattaatctcaatcccattcttaataacatacccatg |
32163199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 42761176 - 42761122
Alignment:
| Q |
162 |
aattcatcaaacacggaacgagcatcaccaatatcaccacatttaacatacatat |
216 |
Q |
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|||||||||||||| ||||||||||||||| ||||| |||||| ||||||||| |
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| T |
42761176 |
aattcatcaaacaccttacgagcatcaccaatctcaccgcatttaccatacatat |
42761122 |
T |
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