View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10454_low_13 (Length: 260)
Name: NF10454_low_13
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 40102613 - 40102853
Alignment:
| Q |
20 |
tagtggactagttatggagcatgtatattaatttggtgtctcacatttgtcaacaggaagagggagtgaacatcacagtcaactctgtccacccaggagt |
119 |
Q |
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| T |
40102613 |
tagtggactagttatggagcatgtatattaatttggtgtctcacatttgtcaacaggaagagggagtgaacatcacagtcaactctgtccacccaggagt |
40102712 |
T |
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| Q |
120 |
gataatgactcctcttatgagatactcttcttacacaatgcgtatgttaattctccttaaacacaaaagacaaatataacattgtctatgatttcactca |
219 |
Q |
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| T |
40102713 |
gataatgactcctcttatgagatactcttcttacacaatgcgtatgttaattctccttaaacacaaaagacaaatataacattgtctatgatttcactca |
40102812 |
T |
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| Q |
220 |
caaggatatatactttgtgttaagtaatataatatagctca |
260 |
Q |
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| T |
40102813 |
caaggatatatactttgtgttaagtaatataatatagctca |
40102853 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 29517655 - 29517576
Alignment:
| Q |
72 |
acaggaagagggagtgaacatcacagtcaactctgtccacccaggagtgataatgactcctcttatgagatactcttctt |
151 |
Q |
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| T |
29517655 |
acaggaagaaggtgtcaatatcacagccaactcagtacacccaggagtaataatgactcctcttatgagacactcttctt |
29517576 |
T |
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