View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10454_low_14 (Length: 223)
Name: NF10454_low_14
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49120771 - 49120993
Alignment:
| Q |
1 |
tcctacaatatagaagcagcgaggtaatcatgtctttggtaatactaactggcgtggcagcatcatgttattcatgatcacattatcatatacttgattc |
100 |
Q |
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| T |
49120771 |
tcctacaatatagaagcagcgaggtaatcatgtctttggtaatactaactggcgtggcagcatcatgttattcatgatcacattatcatatacttgattc |
49120870 |
T |
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| Q |
101 |
tcacttttcatgtatcaagtggactactatctctggctcaaactcttagatggatcggttgaatattgtgtcactctaagtgttcctccaagctcaactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49120871 |
tcacttttcatgtatcaagtggactactatctctggctcaaactcttagatggatcggttgaatattgtgtcactctaagtgttcctccaagctcaactg |
49120970 |
T |
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| Q |
201 |
gaacaagagggacgagggagtga |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
49120971 |
gaacaagagggacgagggagtga |
49120993 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 4273846 - 4273797
Alignment:
| Q |
173 |
actctaagtgttcctccaagctcaactggaacaagagggacgagggagtg |
222 |
Q |
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| T |
4273846 |
actctgagtgttcctccaagctcaacaggtacaagagggatgagggagtg |
4273797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 2809944 - 2809895
Alignment:
| Q |
173 |
actctaagtgttcctccaagctcaactggaacaagagggacgagggagtg |
222 |
Q |
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| T |
2809944 |
actctgagtgttcctccaagctcaacaggtacaagagggatgagggagtg |
2809895 |
T |
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