View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10454_low_3 (Length: 474)
Name: NF10454_low_3
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 44243085 - 44243534
Alignment:
| Q |
18 |
gtactgaactttcaacattcagttaatgctttgaatccgaacctagtatcatccatgctcctttcattctcaacgtcattttcttggtaggttttgaact |
117 |
Q |
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| T |
44243085 |
gtactgaactttcaacattcagttaatgctttgaatccgaacctagtatcatccatgctcctttcattctcaacgtcattttcttggtaggttttgaact |
44243184 |
T |
|
| Q |
118 |
ctctaattttacttctacctttcttctcagcaatcagagcacatttgaacttgaaaataactagaagggtaaaataaactctttcacctaataacacgat |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44243185 |
ctctaattttacttttacctttcttctcagcaatcagagcacatttgaacttgaaaataactagaagggtaaaataaactctttcacctaataacacgat |
44243284 |
T |
|
| Q |
218 |
atggtgaaattttacacctctttttaggccattattctggtacaccaaaaaatcctacattatttgaaagttgagactaaagtagttaataaacaatact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
44243285 |
atggtgaaattttacacctctttttaggccattattctggtacaccaaaaaatcctacattatttgaaagttcagactaaagtagttaataaacaacact |
44243384 |
T |
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| Q |
318 |
catacttgttaaaaagacactcatactttacataactacaacaaaaactagtag-------nnnnnnnnnnataaaggcaaattagtgagagtttacaca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44243385 |
catacttgttaaaaagacactcatactttacataactacaacaaaaactagtagtttttttttttttttttataaaggcaaattagtgagagtttacaca |
44243484 |
T |
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| Q |
411 |
aagtccaaactgaacaatacttcaaaaatagtggtgtgggtatgatgtcc |
460 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
44243485 |
aagtccaaactgaacaatacttcaaaaatagtggcgtgggtatgaggtcc |
44243534 |
T |
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